GitHub
fwl-calliope
An equilibrium model for interior-atmosphere volatile partitioning on lava planets
https://github.com/ivis-at-bilkent/cytoscape.js-chola
Orthogonal layout for graphs with compound nodes
rfsd
The Russian Financial Statements Database (RFSD) is an open, harmonized collection of annual unconsolidated financial statements of the universe of Russian firms in 2011-2023. It is the first open data set with information on every active firm in the country, including non-filing firms.
https://github.com/ivis-at-bilkent/chilay
Chisio Layout (ChiLay) provides a graph layout framework along with a number of layout algorithms implemented in Java. Layout services can be used locally or remotely (through HTTP) from a server.
virtual-cat-programming-language-interpreter
This is a softaware component of the virtual Cross Array Task (CAT) platform that translates user actions, including gesture interactions and arranged visual programming blocks, into executable machine-readable instructions, a formal algorithm specified using the CAT programming language.
halfpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
https://github.com/ivis-at-bilkent/cytoscape.js-c-tsm
Compound-Topology Shape Metrics Approach
generalbfxpkg
An R package for data manipulation of general bioinformatics and clinical data.
https://github.com/ivis-at-bilkent/cytoscape.js-cosep
Compound Spring Embedder with Ports (CoSEP)
elucidatornf
A collection of workflows to stream together tools from within elucidator
https://github.com/ivis-at-bilkent/cose-lat
A tool for animation during CoSE layout to debug and improve the algorithm
autogalaxy_workspace
The PyAutoGalaxy Workspace: contains example scripts, datasets and more
https://github.com/ivis-at-bilkent/chilay.maven-repo
Automatically exported from code.google.com/p/chilay.maven-repo
complex-float64-base-identity
Evaluate the identity function for a double-precision complex floating-point number.
padre_sharp
Software to download, analyze, and process for the SHARP instrument of the NASA PADRE mission
pmv-si-2023-2-pe1-t2-conecta
pmv-si-2023-2-pe1-t2-conecta created by GitHub Classroom
goa-rockfish-cog
Empirical center of gravity estimates for Gulf of Alaska rockfish species. ESR contribution.
multicom_ligand
Comprehensive ensembling of protein-ligand structure and affinity prediction methods (CASP16)
latent_dirichlet_allocation
Topic modeling (LDA) extracts latent topics distributed across documents and represent them with most likely words.
pfr
Repository for formalization of the Polynomial Freiman Ruzsa conjecture (and related results)
plantilla-colecciones
Plantilla para construir sitios estáticos para colecciones documentales, desarrollada por el HD LAB-CONICET.
allophant
A multilingual phoneme recognizer capable of generalizing zero-shot to unseen phoneme inventories.
https://github.com/fgcz/iscb2017
This R package contains data and vignette files for a Pigeon Pea (Cajanus cajan) project from a Indo-Swiss Collaboration in Biotechnology (ISCB) training course on proteome informatics given from January 21th to January 25th 2017 at the National Research Centre on Plant Biotechnology (NRCPB) in New Delhi-110012 by JG, WEW, and CP.
phylophoenix
🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
xai-proteins
Insights into the inner workings of transformer models for protein function prediction
hipiler
Visual exploration of large genome interaction matrices with interactive small multiples.
https://github.com/fgcz/fcc
An automated rule-based processing tool for life science data.
phip-seq-tp-vac
Pipeline for analysis of the Treponema pallidum PhiP-Seq assay data @ Greninger Lab
torchgeo
TorchGeo: datasets, samplers, transforms, and pre-trained models for geospatial data
https://github.com/fgcz/specl
prepare peptide spectrum matches for use in targeted proteomics using R and Bioconductor
hlb-cifar10
Train to 94% on CIFAR-10 in <6.3 seconds on a single A100. Or ~95.79% in ~110 seconds (or less!)
https://github.com/fgerick/shtns.jl
Fast spherical harmonic transforms using C library SHTns
manual
Book describing how to use interactive textbooks, our extensions and our workflow: teachbooks.github.io/manual (release branch).
shiyuasuka-twostageclip_swintransformer
This project revolves around creating a simplified transformer-based model for image detection. Our goal is to reduce computational complexity while still achieving high performance. We developed and evaluated two new models, offering a promising foundation for future improvements.
markdown-read-to-headline
Markdown tool to read markdown from a file or stdin, then print the first headline content
mesa-explorer
Web-based visualization tool for the MESA simulations of stars. Built with Bootstrap 5.3 and d3 v7.8.4
sha256-sentence
SHA256 sentence: discover a SHA256 checksum that matches a sentence's description of hex digit words.