https://github.com/ch-liv/reproducibleresearch
Tools for the reproducible research workshop
https://github.com/ch-sander/scigma
Temporary research repository for SCIGMA project
https://github.com/cthoyt/table-validator
Use tables with validation schemata to validate other tables.
https://github.com/cthoyt/bern2
BERN2: an advanced neural biomedical namedentity recognition and normalization tool
https://github.com/cthoyt/xao
XAO represents the anatomy and development of the African frogs Xenopus laevis and X. tropicalis.
https://github.com/cthoyt/tdc
Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development
https://github.com/cthoyt/symptomontology
The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance reported by a patient indicative of a disease”. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it’s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom. The Symptom Ontology is available under CC0 license (https://creativecommons.org/publicdomain/zero/1.0/).
https://github.com/cthoyt/swords-uu
Implementation of the SWORDS framework for Utrecht University.
https://github.com/cthoyt/scikit-kge
Python library to compute knowledge graph embeddings
https://github.com/cthoyt/sfi
An implementation of the Solubility Forecast Index (SFI)
https://github.com/cthoyt/semantic-python-overview
(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)
https://github.com/cthoyt/rexmex
A general purpose recommender metrics library for fair evaluation.