pyrealm
Development of the pyrealm package, providing an integrated toolbox for modelling plant productivity, growth and demography using Python.
grnsight
Web app and service for modeling and visualizing gene regulatory networks.
ShakeNBreak
ShakeNBreak: Navigating the defect configurational landscape - Published in JOSS (2022)
rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
ag2
AG2 (formerly AutoGen): The Open-Source AgentOS. Join us at: https://discord.gg/pAbnFJrkgZ
Ciclope: micro Computed Tomography to Finite Elements
Ciclope: micro Computed Tomography to Finite Elements - Published in JOSS (2023)
ERAD: A Graph-Based Tool for Energy Resilience Analysis of Electric Distribution Systems
ERAD: A Graph-Based Tool for Energy Resilience Analysis of Electric Distribution Systems - Published in JOSS (2025)
metric-temporal-logic
Python library for working with Metric Temporal Logic (MTL)