https://github.com/ameynert/wrangling-genomics
Data Wrangling and Processing for Genomics
https://github.com/ameynert/viralrecon
UNDER CONSTRUCTION: Assembly and intrahost/low-frequency variant calling for viral samples
https://github.com/ameynert/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
https://github.com/ameynert/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
https://github.com/ameynert/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
https://github.com/ameynert/good-enough-practices
Good Enough Practices in Scientific Computing
https://github.com/ameynert/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
https://github.com/ameynert/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
https://github.com/ami-iit/paper_sartore_2025_ergocub_nature_machine_intelligence
https://github.com/ami-iit/paper_gorbani_2025_humanoids_multi-rate-mpc-ironcub
Code associated to the Humanoids 2025 paper "Unified Multi-Rate Model Predictive Control for a Jet-Powered Humanoid Robot"
https://github.com/ami-iit/ironcub-models
URDF and XML models of the iRonCub humanoid robot
https://github.com/ami-iit/human-model-generator
Python-based tool to generate anthropometric human whole-body models in a URDF format
https://github.com/ami-iit/maniskill
SAPIEN Manipulation Skill Framework, an open source GPU parallelized robotics simulator and benchmark, led by Hillbot, Inc.