Fraggler — Peer-reviewed • Rank 2.3 • Science 93%

Fraggler: A Python Package and CLI Tool for Automated Fragment Analysis - Published in JOSS (2024)

MOAFS — Peer-reviewed • Rank 2.3 • Science 93%

MOAFS: A Massive Online Analysis library for feature selection in data streams - Published in JOSS (2020)

rocrate • Rank 18.3 • Science 77%

Python library for RO-Crate

pyrho • Rank 18.3 • Science 77%

higlass • Rank 18.2 • Science 77%

Fast, flexible and extensible genome browser.

BrainGlobe Atlas API — Peer-reviewed • Rank 18.2 • Science 77%

BrainGlobe Atlas API: a common interface for neuroanatomical atlases - Published in JOSS (2020)

SARAS — Peer-reviewed • Rank 2.2 • Science 93%

SARAS: A general-purpose PDE solver for fluid dynamics - Published in JOSS (2021)

subMALDI — Peer-reviewed • Rank 2.2 • Science 93%

subMALDI: an open framework R package for processing irregularly-spaced mass spectrometry data - Published in JOSS (2021)

J2suscep — Peer-reviewed • Rank 2.2 • Science 93%

J2suscep: Calculation of magnetic exchange coupling and temperature dependence of magnetic susceptibility - Published in JOSS (2021)

HARE — Peer-reviewed • Rank 2.2 • Science 93%

HARE: A Python workflow for analyzing genomic feature enrichment in GWAS datasets - Published in JOSS (2024)

GIMS — Peer-reviewed • Rank 6.2 • Science 89%

GIMS: Graphical Interface for Materials Simulations - Published in JOSS (2021)

discretize • Rank 18.2 • Science 77%

Discretization tools for finite volume and inverse problems.

pyabsa • Rank 18.2 • Science 77%

Sentiment Analysis, Text Classification, Text Augmentation, Text Adversarial defense, etc.;

Groundhog - A general-purpose geotechnical Python package • Rank 8.2 • Science 87%

Groundhog - A general-purpose geotechnical Python package - Published in JOSS (2026)

CART — Peer-reviewed • Rank 2.1 • Science 93%

CART: A Tool for Making Paper Relevancy Screening Easier - Published in JOSS (2024)

mikecalsetup — Peer-reviewed • Rank 2.1 • Science 93%

mikecalsetup: an open-source python tool for automatically creating calibration setups of MIKE SHE models in PEST or OSTRICH - Published in JOSS (2023)

NEEP — Peer-reviewed • Rank 2.1 • Science 93%

NEEP: null empirically estimated p-values for high-throughput molecular survival analysis - Published in JOSS (2020)

dms-viz — Peer-reviewed • Rank 2.1 • Science 93%

dms-viz: Structure-informed visualiz ations for deep mutational scanning and other mutation-based datasets - Published in JOSS (2024)

datasailr - An R Package for Row by Row Data Processing, Using DataSailr Script — Peer-reviewed • Rank 2.1 • Science 93%

datasailr - An R Package for Row by Row Data Processing, Using DataSailr Script - Published in JOSS (2021)

stacomiR — Peer-reviewed • Rank 2.1 • Science 93%

stacomiR : a common tool for monitoring fish migration - Published in JOSS (2019)