Projects

Updated 9 months ago

gtfsort • Rank 12.3 • Science 67%

a lexicographically-based GTF/GFF sorter

algorithms bioinformatics gtf sorting sorting-algorithms

Updated 9 months ago

factr • Rank 2.7 • Science 10%

factR: Functional Annotation of Custom-assembled Transcripts in R

custom-transcriptomes functional-annotation gtf rna-seq-analysis

Updated 9 months ago

https://github.com/cumbof/opengdc • Science 39%

An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format

bed bioinformatics csv gdc gtf json target tcga

Updated 9 months ago

https://github.com/alejandrogzi/noel • Science 13%

GTF/GFF per gene non-overlapping exon length calculator

exon gene-annotation gff gtf length non-overlapping

Updated 9 months ago

https://github.com/alejandrogzi/gxf2bed • Science 26%

fastest GTF/GFF-to-BED converter chilling around

bed converter gene-annotation gff gtf high-performance

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

gtfsort • Rank 12.3 • Science 67%

factr • Rank 2.7 • Science 10%

https://github.com/cumbof/opengdc • Science 39%

https://github.com/alejandrogzi/noel • Science 13%

https://github.com/alejandrogzi/gxf2bed • Science 26%