Scientific Software
Updated 6 months ago

PET2BIDS — Peer-reviewed • Rank 12.4 • Science 100%

PET2BIDS: a library for converting Positron Emission Tomography data to BIDS - Published in JOSS (2024)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

General binary file parser. — Peer-reviewed • Rank 9.2 • Science 95%

General binary file parser. - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Updated 6 months ago

fastapi • Rank 37.7 • Science 54%

FastAPI framework, high performance, easy to learn, fast to code, ready for production

Updated 6 months ago

sqlmodel • Rank 29.9 • Science 54%

SQL databases in Python, designed for simplicity, compatibility, and robustness.

Updated 6 months ago

click-extra • Rank 16.5 • Science 67%

🌈 Drop-in replacement for Click to make user-friendly and colorful CLI

Updated 6 months ago

jsonschema • Rank 35.5 • Science 46%

An implementation of the JSON Schema specification for Python

Updated 6 months ago

jsonargparse • Rank 24.5 • Science 54%

Implement minimal boilerplate CLIs derived from type hints and parse from command line, config files and environment variables

Updated 6 months ago

tmuxp • Rank 23.5 • Science 54%

🖥️ Session manager for tmux, built on libtmux.

Updated 6 months ago

json_repair • Rank 26.6 • Science 44%

A python module to repair invalid JSON from LLMs

Updated 6 months ago

ucall • Rank 16.3 • Science 54%

Web Serving and Remote Procedure Calls at 50x lower latency and 70x higher bandwidth than FastAPI, implementing JSON-RPC & REST over io_uring ☎️

Updated 5 months ago

https://github.com/ijl/orjson • Rank 33.4 • Science 36%

Fast, correct Python JSON library supporting dataclasses, datetimes, and numpy

Updated 6 months ago

ustore • Rank 15.3 • Science 54%

Multi-Modal Database replacing MongoDB, Neo4J, and Elastic with 1 faster ACID solution, with NetworkX and Pandas interfaces, and bindings for C 99, C++ 17, Python 3, Java, GoLang 🗄️

Updated 5 months ago

simplejson • Rank 33.3 • Science 36%

simplejson is a simple, fast, extensible JSON encoder/decoder for Python

Updated 6 months ago

jsonpickle • Rank 32.8 • Science 36%

Python library for serializing any arbitrary object graph into JSON. It can take almost any Python object and turn the object into JSON. Additionally, it can reconstitute the object back into Python.

Updated 6 months ago

datatools • Rank 5.7 • Science 62%

A set of tools for working with JSON, CSV and Excel workbooks

Updated 6 months ago

dataset • Rank 5.0 • Science 62%

dataset is a command line tool, Go package, shared library and Python package for working with JSON objects as collections

Updated 6 months ago

externdata • Rank 7.0 • Science 57%

:page_facing_up: Modelica library for data I/O of CSV, INI, JSON, MATLAB MAT, SSV, TIR, Excel XLS/XLSX and XML files

Updated 6 months ago

pheno-ranker-ui • Rank 4.3 • Science 57%

The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

Updated 6 months ago

undictify • Rank 15.0 • Science 44%

Python library providing type-checked function calls at runtime

Updated 6 months ago

dicter • Rank 4.5 • Science 54%

Python package with advanced dictionary functions. Traverse through nested dicts. Set and get multiple keys. Flattens dicts. Store and load in json and more!

Updated 6 months ago

pyconfs • Rank 14.4 • Science 44%

Unified handling of configuration files in Python

Updated 6 months ago

datalogs • Rank 6.0 • Science 52%

Python package for logging data from scientific experiments.

Updated 6 months ago

fitz-collection-raw-data • Rank 2.3 • Science 54%

Raw data from the collections database in json and csv format

Updated 6 months ago

tamga • Rank 9.9 • Science 44%

A modern, high-performance logging utility for Python with multiple output formats and colorful console output.

Updated 5 months ago

https://github.com/bytedance/sonic • Rank 26.7 • Science 26%

A blazingly fast JSON serializing & deserializing library

Updated 6 months ago

bioc • Rank 16.7 • Science 33%

Data structures and code to read/write BioC XML and Json.

Updated 6 months ago

@hugoalh/is-json • Rank 3.2 • Science 44%

An ECMAScript (JavaScript & TypeScript) module to determine whether the item is a JSON.

Updated 5 months ago

https://github.com/segmentio/encoding • Rank 10.0 • Science 36%

Go package containing implementations of efficient encoding, decoding, and validation APIs.

Updated 5 months ago

https://github.com/mverleg/pyjson_tricks • Rank 19.8 • Science 23%

Extra features for Python's JSON: comments, order, numpy, pandas, datetimes, and many more! Simple but customizable.

Updated 6 months ago

odin • Rank 13.6 • Science 26%

Data-structure definition/validation/traversal, mapping and serialisation toolkit for Python

Updated 6 months ago

pyzenodo3 • Rank 11.5 • Science 28%

Simple, clean pure Python 3 Zenodo API (upload, download).

Updated 6 months ago

related • Rank 27.9 • Science 10%

Nested Object Models in Python with dictionary, YAML, and JSON transformation support

Updated 5 months ago

https://github.com/cube2222/octosql • Rank 14.4 • Science 23%

OctoSQL is a query tool that allows you to join, analyse and transform data from multiple databases and file formats using SQL.

Updated 4 months ago

https://github.com/ebi-jdispatcher/sss_json_schema • Rank 0.0 • Science 34%

JSON schema for EBI's Job Dispatcher sequence similarity search outputs

Updated 5 months ago

https://github.com/SocAIty/media-toolkit • Rank 7.3 • Science 26%

Web-ready standardized file processing and serialization. Read, write, convert and send files. Including image, audio, video and any other file. Easily convert between numpy, base64, bytes and more.

Updated 5 months ago

weather-stations • Rank 7.0 • Science 26%

A list of public weather stations everyone can edit and share.

Updated 5 months ago

rdl-standard • Rank 6.7 • Science 26%

The Risk Data Library Standard (RDLS) is an open data standard to make it easier to work with disaster and climate risk data. It provides a common description of the data used and produced in risk assessments, including hazard, exposure, vulnerability, and modelled loss, or impact, data.

Updated 5 months ago

https://github.com/coqui-ai/coqpit • Rank 18.5 • Science 13%

Simple but maybe too simple config management through python data classes. We use it for machine learning.

Updated 6 months ago

bigchaindb • Rank 18.4 • Science 13%

Meet BigchainDB. The blockchain database.

Updated 6 months ago

iandn-kids • Rank 0.0 • Science 31%

This project was developed during the first semester of my Computer Science degree at PUC Minas. It aims to help parents take care of their children by reducing screen time on smartphones, promoting healthier interactions and activities.

Updated 6 months ago

lollipop • Rank 16.4 • Science 13%

Python data serialization/validation library

Updated 5 months ago

https://github.com/bayer-group/cmc-knowledge-graph-backend • Rank 1.8 • Science 26%

This is submodule containing the backend related code.

Updated 5 months ago

https://github.com/alexisvassquez/trackthatmoney • Rank 0.7 • Science 26%

An expense tracking mobile-first app to know why you're broke. For ND individuals who get overwhelmed dealing with finances.

Updated 5 months ago

https://github.com/andrew/json-schema-diff • Rank 0.7 • Science 26%

Semantic diff for JSON files using JSON Schema metadata

Updated 5 months ago

sde • Rank 9.6 • Science 13%

Structured data editor for CLI

Updated 5 months ago

rconfig • Rank 9.5 • Science 13%

Manage R Configuration at the Command Line

Updated 5 months ago

slurm • Rank 6.6 • Science 13%

Some useful python tools

Updated 5 months ago

jsonnormalize • Rank 6.5 • Science 13%

Normalize JSON strings.

Updated 4 months ago

https://github.com/dwhieb/jschemer • Rank 3.7 • Science 13%

A Node.js library to generate documentation for JSON Schemas

Updated 5 months ago

https://github.com/0xibra/delivereo • Rank 1.1 • Science 13%

Delivereo is a web platform where consumers can order food from restaurants of their location and restaurants owners can register and expand their business.

Updated 4 months ago

https://github.com/devidw/hashnode-export-to-markdown • Rank 0.0 • Science 13%

Convert Hashnode export JSON into single markdown files with frontmatter and downloads of your cover images

Updated 5 months ago

https://github.com/callumrollo/github-scraper • Rank 0.0 • Science 13%

Scraping GitHub to visualise users' commits during a hackweek

Updated 6 months ago

wolfsoftware.data-converter • Science 44%

A data converter package to convert data between JSON, YAML and XML.

Updated 6 months ago

eya_def • Science 44%

A digital format for exchange of wind energy yield assessment reporting information as defined by IEC 61400-15-2

Updated 5 months ago

https://github.com/cumbof/opengdc • Science 39%

An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format

Updated 5 months ago

https://github.com/chrimle/record2json • Science 13%

Parse and convert stringified Java records into JSON.

Updated 5 months ago

https://github.com/adamouization/asp-timetable • Science 13%

:calendar: ASP-Timetable is an AI logic program implemented in a declarative manner using ASP and Clingo (2017)

Updated 5 months ago

https://github.com/copyleftdev/jsonviz • Science 13%

visualize json files in the terminal