Updated 6 months ago
https://github.com/alejandrogzi/noel
GTF/GFF per gene non-overlapping exon length calculator
Updated 6 months ago
https://github.com/candygene/siga
Semantically Interoperable Genome Annotations
Updated 6 months ago
gff2ddbj
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
Updated 6 months ago
https://github.com/alejandrogzi/gxf2bed
fastest GTF/GFF-to-BED converter chilling around
Updated 6 months ago
inferring-exon-and-intron-metadata-from-.gff-file
This pipeline infers exon functional annotations using coordinates from a .gff file and derives corresponding intron coordinates along with relevant annotations. Users can optionally specify the length of intronic fragments to extract. The pipeline is suited for splicing code analyses.