Projects

Updated 10 months ago

exllsm-circuit-reconstruction • Rank 4.3 • Science 67%

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

image-processing lightsheet machine-learning microscopy neuroscience nextflow-pipelines pipeline segmentation

Updated 10 months ago

lls-core • Rank 12.2 • Science 57%

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

deconvolution deskewing image-analysis-and-processing lattice lightsheet microscopy napari oblique-plane python zeiss

Updated 10 months ago

shrimpy • Science 57%

shrimPy: Smart High-throughput Robust Imaging & Measurement in Python

high-throughput-data-analysis high-throughput-imaging labelfree lightsheet multi-modal-imaging

ecosyste.ms

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Open Source Science

exllsm-circuit-reconstruction • Rank 4.3 • Science 67%

lls-core • Rank 12.2 • Science 57%

shrimpy • Science 57%