Scientific Software
Updated 6 months ago

hdbscan — Peer-reviewed • Rank 33.3 • Science 95%

hdbscan: Hierarchical density based clustering - Published in JOSS (2017)

Scientific Software
Updated 6 months ago

Intracranial Electrode Location and Analysis in MNE-Python — Peer-reviewed • Rank 26.8 • Science 100%

Intracranial Electrode Location and Analysis in MNE-Python - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

UMAP — Peer-reviewed • Rank 29.1 • Science 95%

UMAP: Uniform Manifold Approximation and Projection - Published in JOSS (2018)

Engineering (40%) Materials Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

MLxtend — Peer-reviewed • Rank 26.9 • Science 95%

MLxtend: Providing machine learning and data science utilities and extensions to Python's scientific computing stack - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

Flux — Peer-reviewed • Rank 21.9 • Science 100%

Flux: Elegant machine learning with Julia - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

imodels — Peer-reviewed • Rank 21.0 • Science 100%

imodels: a python package for fitting interpretable models - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

Yellowbrick — Peer-reviewed • Rank 26.0 • Science 95%

Yellowbrick: Visualizing the Scikit-Learn Model Selection Process - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

sbi reloaded — Peer-reviewed • Rank 20.0 • Science 100%

sbi reloaded: a toolkit for simulation-based inference workflows - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

samgeo — Peer-reviewed • Rank 19.9 • Science 100%

samgeo: A Python package for segmenting geospatial data with the Segment Anything Model (SAM) - Published in JOSS (2023)

Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

anndata — Peer-reviewed • Rank 24.6 • Science 95%

anndata: Access and store annotated data matrices - Published in JOSS (2024)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Surprise — Peer-reviewed • Rank 24.4 • Science 95%

Surprise: A Python library for recommender systems - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

TorchGAN — Peer-reviewed • Rank 18.9 • Science 100%

TorchGAN: A Flexible Framework for GAN Training and Evaluation - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

mlpack 4 — Peer-reviewed • Rank 23.9 • Science 95%

mlpack 4: a fast, header-only C++ machine learning library - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

gmr — Peer-reviewed • Rank 18.2 • Science 100%

gmr: Gaussian Mixture Regression - Published in JOSS (2021)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Verde — Peer-reviewed • Rank 18.0 • Science 100%

Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

Feature-engine — Peer-reviewed • Rank 24.3 • Science 93%

Feature-engine: A Python package for feature engineering for machine learning - Published in JOSS (2021)

Mathematics Economics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PySwarms — Peer-reviewed • Rank 22.0 • Science 95%

PySwarms: a research toolkit for Particle Swarm Optimization in Python - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

mlr3 — Peer-reviewed • Rank 21.2 • Science 95%

mlr3: A modern object-oriented machine learning framework in R - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PySINDy — Peer-reviewed • Rank 21.2 • Science 95%

PySINDy: A comprehensive Python package for robust sparse system identification - Published in JOSS (2022)

Economics Materials Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Augmentor — Peer-reviewed • Rank 20.7 • Science 95%

Augmentor: An Image Augmentation Library for Machine Learning - Published in JOSS (2017)

Materials Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Machine Learning Validation via Rational Dataset Sampling with astartes — Peer-reviewed • Rank 15.6 • Science 100%

Machine Learning Validation via Rational Dataset Sampling with astartes - Published in JOSS (2023)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Foolbox Native — Peer-reviewed • Rank 20.0 • Science 95%

Foolbox Native: Fast adversarial attacks to benchmark the robustness of machine learning models in PyTorch, TensorFlow, and JAX - Published in JOSS (2020)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

performance — Peer-reviewed • Rank 21.8 • Science 93%

performance: An R Package for Assessment, Comparison and Testing of Statistical Models - Published in JOSS (2021)

Engineering (40%) Earth and Environmental Sciences (40%) Economics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

torchquad — Peer-reviewed • Rank 14.3 • Science 100%

torchquad: Numerical Integration in Arbitrary Dimensions with PyTorch - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

Talisman — Peer-reviewed • Rank 20.9 • Science 93%

Talisman: a JavaScript archive of fuzzy matching, information retrieval and record linkage building blocks - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

PyClustering — Peer-reviewed • Rank 20.2 • Science 93%

PyClustering: Data Mining Library - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

SMACT — Peer-reviewed • Rank 17.7 • Science 95%

SMACT: Semiconducting Materials by Analogy and Chemical Theory - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

DeepHyper — Peer-reviewed • Rank 17.6 • Science 95%

DeepHyper: A Python Package for Massively Parallel Hyperparameter Optimization in Machine Learning - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

DeepRiver — Peer-reviewed • Rank 12.6 • Science 100%

DeepRiver: A Deep Learning Library for Data Streams - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

Pyglmnet — Peer-reviewed • Rank 16.9 • Science 95%

Pyglmnet: Python implementation of elastic-net regularized generalized linear models - Published in JOSS (2020)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Larq — Peer-reviewed • Rank 16.7 • Science 95%

Larq: An Open-Source Library for Training Binarized Neural Networks - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

tpcp — Peer-reviewed • Rank 12.9 • Science 98%

tpcp: Tiny Pipelines for Complex Problems - A set of framework independent helpers for algorithms development and evaluation - Published in JOSS (2023)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

f3dasm — Peer-reviewed • Rank 12.7 • Science 98%

f3dasm: Framework for Data-Driven Design and Analysis of Structures and Materials - Published in JOSS (2024)

Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

InvertibleNetworks.jl — Peer-reviewed • Rank 10.6 • Science 100%

InvertibleNetworks.jl: A Julia package for scalable normalizing flows - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

VeridicalFlow — Peer-reviewed • Rank 10.4 • Science 100%

VeridicalFlow: a Python package for building trustworthy data science pipelines with PCS - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

Abmarl — Peer-reviewed • Rank 11.6 • Science 98%

Abmarl: Connecting Agent-Based Simulations with Multi-Agent Reinforcement Learning - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

quantile-forest — Peer-reviewed • Rank 16.5 • Science 93%

quantile-forest: A Python Package for Quantile Regression Forests - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

OMG — Peer-reviewed • Rank 11.3 • Science 98%

OMG: A Scalable and Flexible Simulation and Testing Environment Toolbox for Intelligent Microgrid Control - Published in JOSS (2020)

Updated 4 months ago

Nkululeko 1.0: A Python package to predict speaker characteristics with a high-level interface • Rank 14.2 • Science 95%

Nkululeko 1.0: A Python package to predict speaker characteristics with a high-level interface - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

timeseriesflattener — Peer-reviewed • Rank 11.2 • Science 98%

timeseriesflattener: A Python package for summarizing features from (medical) time series - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

PyVBMC — Peer-reviewed • Rank 11.1 • Science 98%

PyVBMC: Efficient Bayesian inference in Python - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science — Peer-reviewed • Rank 14.0 • Science 95%

Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science - Published in JOSS (2024)

Artificial Intelligence and Machine Learning (30%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

BayesO — Peer-reviewed • Rank 10.8 • Science 98%

BayesO: A Bayesian optimization framework in Python - Published in JOSS (2023)

Artificial Intelligence and Machine Learning (31%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

SysIdentPy — Peer-reviewed • Rank 15.8 • Science 93%

SysIdentPy: A Python package for System Identification using NARMAX models - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

mikropml — Peer-reviewed • Rank 13.7 • Science 95%

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PyBCI — Peer-reviewed • Rank 8.7 • Science 100%

PyBCI: A Python Package for Brain-Computer Interface (BCI) Design - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

MemCNN — Peer-reviewed • Rank 13.6 • Science 95%

MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks - Published in JOSS (2019)

Biology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Multiblock PLS — Peer-reviewed • Rank 10.3 • Science 98%

Multiblock PLS: Block dependent prediction modeling for Python - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

ParaMonte — Peer-reviewed • Rank 13.2 • Science 95%

ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

MapReader — Peer-reviewed • Rank 8.2 • Science 100%

MapReader: Open software for the visual analysis of maps - Published in JOSS (2024)

Political Science Earth and Environmental Sciences
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

FTorch — Peer-reviewed • Rank 8.0 • Science 100%

FTorch: a library for coupling PyTorch models to Fortran - Published in JOSS (2025)

Agricultural and Biological Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

FuseMedML — Peer-reviewed • Rank 14.8 • Science 93%

FuseMedML: a framework for accelerated discovery in machine learning based biomedicine - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

Jury — Peer-reviewed • Rank 14.8 • Science 93%

Jury: A Comprehensive Evaluation Toolkit - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

TorchMetrics - Measuring Reproducibility in PyTorch — Peer-reviewed • Rank 30.8 • Science 77%

TorchMetrics - Measuring Reproducibility in PyTorch - Published in JOSS (2022)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

ivis — Peer-reviewed • Rank 14.7 • Science 93%

ivis: dimensionality reduction in very large datasets using Siamese Networks - Published in JOSS (2019)

Biochemistry, Genetics and Molecular Biology
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

swyft — Peer-reviewed • Rank 12.6 • Science 95%

swyft: Truncated Marginal Neural Ratio Estimation in Python - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

AddaxAI — Peer-reviewed • Rank 7.5 • Science 100%

AddaxAI: A no-code platform to train and deploy custom YOLOv5 object detection models - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

GNS — Peer-reviewed • Rank 7.3 • Science 100%

GNS: A generalizable Graph Neural Network-based simulator for particulate and fluid modeling - Published in JOSS (2023)

Biology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

pocoMC — Peer-reviewed • Rank 11.9 • Science 95%

pocoMC: A Python package for accelerated Bayesian inference in astronomy and cosmology - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

ChainoPy — Peer-reviewed • Rank 8.9 • Science 98%

ChainoPy: A Python Library for Discrete Time Markov Chain Based Stochastic Analysis - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

SkyPortal — Peer-reviewed • Rank 11.6 • Science 95%

SkyPortal: An Astronomical Data Platform - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

mcboost — Peer-reviewed • Rank 11.5 • Science 95%

mcboost: Multi-Calibration Boosting for R - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

py_neuromodulation — Peer-reviewed • Rank 11.4 • Science 95%

py_neuromodulation: Signal processing and decoding for neural electrophysiological recordings - Published in JOSS (2025)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Contextualized — Peer-reviewed • Rank 11.4 • Science 95%

Contextualized: Heterogeneous Modeling Toolbox - Published in JOSS (2024)

Sociology Engineering (40%) Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Osprey — Peer-reviewed • Rank 11.4 • Science 95%

Osprey: Hyperparameter Optimization for Machine Learning - Published in JOSS (2016)

Artificial Intelligence and Machine Learning (32%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

SIRUS.jl — Peer-reviewed • Rank 8.0 • Science 98%

SIRUS.jl: Interpretable Machine Learning via Rule Extraction - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

AdaptiveResonance.jl — Peer-reviewed • Rank 5.9 • Science 100%

AdaptiveResonance.jl: A Julia Implementation of Adaptive Resonance Theory (ART) Algorithms - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity — Peer-reviewed • Rank 10.8 • Science 95%

Python class defining a machine learning dataset ensuring key-based correspondence and maintaining integrity - Published in JOSS (2017)

Scientific Software
Updated 6 months ago

MOTrainer — Peer-reviewed • Rank 7.8 • Science 98%

MOTrainer: Distributed Measurement Operator Trainer for Data Assimilation Applications - Published in JOSS (2024)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

fseval — Peer-reviewed • Rank 7.8 • Science 98%

fseval: A Benchmarking Framework for Feature Selection and Feature Ranking Algorithms - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

lfda — Peer-reviewed • Rank 12.7 • Science 93%

lfda: Local Fisher Discriminant Analysis in R - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

BetaML — Peer-reviewed • Rank 10.5 • Science 95%

BetaML: The Beta Machine Learning Toolkit, a self-contained repository of Machine Learning algorithms in Julia - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

TensorFlow.jl — Peer-reviewed • Rank 10.5 • Science 95%

TensorFlow.jl: An Idiomatic Julia Front End for TensorFlow - Published in JOSS (2018)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

dml — Peer-reviewed • Rank 12.3 • Science 93%

dml: Distance Metric Learning in R - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

fABBA — Peer-reviewed • Rank 10.2 • Science 95%

fABBA: A Python library for the fast symbolic approximation of time series - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

hdlib — Peer-reviewed • Rank 7.0 • Science 98%

hdlib: A Python library for designing Vector-Symbolic Architectures - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

FAT Forensics — Peer-reviewed • Rank 9.9 • Science 95%

FAT Forensics: A Python Toolbox for Implementing and Deploying Fairness, Accountability and Transparency Algorithms in Predictive Systems - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

chemotools — Peer-reviewed • Rank 11.8 • Science 93%

chemotools: A Python Package that Integrates Chemometrics and scikit-learn - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

xtal2png — Peer-reviewed • Rank 9.8 • Science 95%

xtal2png: A Python package for representing crystal structure as PNG files - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

autoplotly — Peer-reviewed • Rank 11.7 • Science 93%

autoplotly: An R package for automatic generation of interactive visualizations for statistical results - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

ClusterValidityIndices.jl — Peer-reviewed • Rank 4.7 • Science 100%

ClusterValidityIndices.jl: Batch and Incremental Metrics for Unsupervised Learning - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Spiral — Peer-reviewed • Rank 4.7 • Science 100%

Spiral: splitters for identifiers in source code files - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

txshift — Peer-reviewed • Rank 9.6 • Science 95%

txshift: Efficient estimation of the causal effects of stochastic interventions in R - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

ATHENA — Peer-reviewed • Rank 4.6 • Science 100%

ATHENA: A Fortran package for neural networks - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

GATree — Peer-reviewed • Rank 6.5 • Science 98%

GATree: Evolutionary decision tree classifier in Python - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

ExpFamilyPCA.jl — Peer-reviewed • Rank 4.5 • Science 100%

ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis - Published in JOSS (2025)

Updated 6 months ago

pykoop • Rank 9.3 • Science 95%

Koopman operator identification library in Python, compatible with `scikit-learn`

Scientific Software
Updated 6 months ago

VisualTorch — Peer-reviewed • Rank 11.0 • Science 93%

VisualTorch: Streamlining Visualization for PyTorch Neural Network Architectures - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

GraphNeT — Peer-reviewed • Rank 8.9 • Science 95%

GraphNeT: Graph neural networks for neutrino telescope event reconstruction - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

Scikit-Longitudinal — Peer-reviewed • Rank 10.7 • Science 93%

Scikit-Longitudinal: A Machine Learning Library for Longitudinal Classification in Python - Published in JOSS (2025)