Updated 9 months ago
https://github.com/shitohana/BSXplorer
Comprehensive tool for visualizing genome-wide cytosine data.
Updated 9 months ago
thesis
nf-core/methylseq methylation (Bisulfite-Sequencing) analysis pipeline using custom Bismark settings + Bismark cytosine reports analysis using Daphnia-adapted DMRichR pipeline
Updated 9 months ago
illumina450k_filtering
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
Updated 9 months ago
ramen
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.