Scientific Software
Updated 6 months ago

Intracranial Electrode Location and Analysis in MNE-Python — Peer-reviewed • Rank 26.8 • Science 100%

Intracranial Electrode Location and Analysis in MNE-Python - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

UMAP — Peer-reviewed • Rank 29.1 • Science 95%

UMAP: Uniform Manifold Approximation and Projection - Published in JOSS (2018)

Engineering (40%) Materials Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PyVista — Peer-reviewed • Rank 27.2 • Science 95%

PyVista: 3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK) - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

Yellowbrick — Peer-reviewed • Rank 26.0 • Science 95%

Yellowbrick: Visualizing the Scikit-Learn Model Selection Process - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

pyam — Peer-reviewed • Rank 19.7 • Science 100%

pyam: a Python Package for the Analysis and Visualization of Models of the Interaction of Climate, Human, and Environmental Systems - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

Regl-Scatterplot — Peer-reviewed • Rank 16.2 • Science 100%

Regl-Scatterplot: A Scalable Interactive JavaScript-based Scatter Plot Library - Published in JOSS (2023)

Biochemistry, Genetics and Molecular Biology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

PlatiPy — Peer-reviewed • Rank 15.1 • Science 100%

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)

Computer Science Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

OpenSpace — Peer-reviewed • Rank 14.2 • Science 100%

OpenSpace: An open-source astrovisualization framework - Published in JOSS (2017)

Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

textnets — Peer-reviewed • Rank 13.9 • Science 100%

textnets: A Python package for text analysis with networks - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

Jupyter Scatter — Peer-reviewed • Rank 15.8 • Science 98%

Jupyter Scatter: Interactive Exploration of Large-Scale Datasets - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

PVGeo — Peer-reviewed • Rank 13.4 • Science 100%

PVGeo: an open-source Python package for geoscientific visualization in VTK and ParaView - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

GemGIS - Spatial Data Processing for Geomodeling — Peer-reviewed • Rank 14.7 • Science 98%

GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

Netgraph — Peer-reviewed • Rank 17.3 • Science 95%

Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

see — Peer-reviewed • Rank 19.0 • Science 93%

see: An R Package for Visualizing Statistical Models - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

FSharpGephiStreamer — Peer-reviewed • Rank 13.3 • Science 98%

FSharpGephiStreamer: An idiomatic bridge between F# and network visualization - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

Delve — Peer-reviewed • Rank 11.6 • Science 98%

Delve: Neural Network Feature Variance Analysis - Published in JOSS (2022)

Earth and Environmental Sciences (40%) Sociology (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

MiscMetabar — Peer-reviewed • Rank 10.8 • Science 98%

MiscMetabar: an R package to facilitate visualization and reproducibility in metabarcoding analysis - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

modelStudio — Peer-reviewed • Rank 13.5 • Science 95%

modelStudio: Interactive Studio with Explanations for ML Predictive Models - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

archetypal — Peer-reviewed • Rank 13.4 • Science 95%

archetypal: A Python package for collecting, simulating, converting and analyzing building archetypes - Published in JOSS (2020)

Sociology Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

unifir — Peer-reviewed • Rank 9.2 • Science 98%

unifir: A Unifying API for Working with Unity in R - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Plonk — Peer-reviewed • Rank 9.2 • Science 98%

Plonk: Smoothed particle hydrodynamics analysis and visualization with Python - Published in JOSS (2019)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

ewstools — Peer-reviewed • Rank 11.1 • Science 95%

ewstools: A Python package for early warning signals of bifurcations in time series data - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

rempsyc — Peer-reviewed • Rank 5.9 • Science 100%

rempsyc: Convenience functions for psychology - Published in JOSS (2023)

Scientific Software
Updated 6 months ago

MicrobiomeR — Peer-reviewed • Rank 5.3 • Science 100%

MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

RSMTool — Peer-reviewed • Rank 12.2 • Science 93%

RSMTool: collection of tools building and evaluating automated scoring models - Published in JOSS (2016)

Scientific Software
Updated 6 months ago

Kepler Mapper — Peer-reviewed • Rank 9.9 • Science 95%

Kepler Mapper: A flexible Python implementation of the Mapper algorithm. - Published in JOSS (2019)

Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

TDAstats — Peer-reviewed • Rank 11.3 • Science 93%

TDAstats: R pipeline for computing persistent homology in topological data analysis - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

VisualTorch — Peer-reviewed • Rank 11.0 • Science 93%

VisualTorch: Streamlining Visualization for PyTorch Neural Network Architectures - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

Psifr — Peer-reviewed • Rank 10.6 • Science 93%

Psifr: Analysis and visualization of free recall data - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

The plebeian Graph Library — Peer-reviewed • Rank 3.4 • Science 100%

The plebeian Graph Library: A WebGL based network visualisation and diagnostics package - Published in JOSS (2024)

Engineering (33%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

EDP — Peer-reviewed • Rank 4.8 • Science 98%

EDP: a program for projecting electron densities from VASP onto planes - Published in JOSS (2023)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

mrivis — Peer-reviewed • Rank 9.8 • Science 93%

mrivis: Medical image visualization library for neuroscience in python - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

TLViz — Peer-reviewed • Rank 4.4 • Science 98%

TLViz: Visualising and analysing tensor decomposition models with Python - Published in JOSS (2022)

Scientific Software · Peer-reviewed
Updated 6 months ago

napari • Rank 25.0 • Science 77%

napari: a fast, interactive, multi-dimensional image viewer for python

Updated 6 months ago

Plots • Rank 24.1 • Science 77%

Powerful convenience for Julia visualizations and data analysis

Scientific Software
Updated 6 months ago

cartoee — Peer-reviewed • Rank 7.9 • Science 93%

cartoee: Publication quality maps using Earth Engine - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

egtplot — Peer-reviewed • Rank 7.9 • Science 93%

egtplot: A Python Package for Three-Strategy Evolutionary Games - Published in JOSS (2018)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Makie.jl — Peer-reviewed • Rank 23.8 • Science 77%

Makie.jl: Flexible high-performance data visualization for Julia - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Simulation Decomposition in Python — Peer-reviewed • Rank 7.8 • Science 93%

Simulation Decomposition in Python - Published in JOSS (2024)

Physics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Visualizing alpha-helical peptides in R with helixvis — Peer-reviewed • Rank 6.9 • Science 93%

Visualizing alpha-helical peptides in R with helixvis - Published in JOSS (2018)

Scientific Software
Updated 6 months ago

Open Source Optical Coherence Tomography Software — Peer-reviewed • Rank 5.9 • Science 93%

Open Source Optical Coherence Tomography Software - Published in JOSS (2020)

Scientific Software
Updated 6 months ago

QMRTools — Peer-reviewed • Rank 5.6 • Science 93%

QMRTools: a Mathematica toolbox for quantitative MRI analysis. - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

pytransform3d — Peer-reviewed • Rank 21.3 • Science 77%

pytransform3d: 3D Transformations for Python - Published in JOSS (2019)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Tidytacos — Peer-reviewed • Rank 4.7 • Science 93%

Tidytacos: An R package for analyses on taxonomic composition of microbial communities - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

Plotrr — Peer-reviewed • Rank 2.5 • Science 95%

Plotrr: Functions for making visual exploratory data analysis with nested data easier. - Published in JOSS (2017)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 6 months ago

igneous-pipeline • Rank 19.3 • Science 77%

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Updated 6 months ago

tf-explain • Rank 18.9 • Science 77%

Interpretability Methods for tf.keras models with Tensorflow 2.x

Updated 6 months ago

higlass • Rank 18.2 • Science 77%

Fast, flexible and extensible genome browser.

Updated 6 months ago

gosling.js • Rank 13.7 • Science 77%

Grammar of Scalable Linked Interactive Nucleotide Graphics

Updated 6 months ago

pygwalker • Rank 24.6 • Science 64%

PyGWalker: Turn your dataframe into an interactive UI for visual analysis

Updated 6 months ago

pdataviewer • Rank 3.6 • Science 85%

Parkinsons Disease cohort landscape visualization

Updated 6 months ago

@uwdata/mosaic-core • Rank 22.2 • Science 65%

An extensible framework for linking databases and interactive views.

Updated 6 months ago

mplhep • Rank 22.6 • Science 64%

Extended histogram plotting on top of matplotlib and HEP collaboration compatible styling

Updated 6 months ago

lida • Rank 19.4 • Science 67%

Automatic Generation of Visualizations and Infographics using Large Language Models

Updated 6 months ago

UnfoldMakie • Rank 8.4 • Science 77%

Plotting and visualization tools for EEG data, with additional Unfold.jl regression ERP methods. Based on the visualization libraries Makie.jl and AlgebraOfGraphics.jl

Updated 6 months ago

avogadro • Rank 18.2 • Science 67%

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

Updated 6 months ago

itk-wasm • Rank 21.0 • Science 64%

High performance spatial analysis in a web browser and across programming languages and hardware architectures

Updated 6 months ago

brainrender • Rank 16.8 • Science 67%

A Python package to visualise neuroanatomical data in atlas space

Scientific Software
Updated 6 months ago

Chemiscope — Peer-reviewed • Rank 15.8 • Science 67%

Chemiscope: interactive structure-property explorer for materials and molecules - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Updated 6 months ago

clinker • Rank 14.8 • Science 67%

Gene cluster comparison figure generator

Updated 6 months ago

vedo • Rank 22.3 • Science 59%

A python module for scientific analysis of 3D data based on VTK and Numpy

Updated 6 months ago

forestplot • Rank 14.0 • Science 67%

A Python package to make publication-ready but customizable coefficient plots.

Updated 6 months ago

opentsne • Rank 20.4 • Science 59%

Extensible, parallel implementations of t-SNE

Updated 6 months ago

asreview-insights • Rank 12.3 • Science 67%

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

Updated 6 months ago

fsbrain • Rank 11.3 • Science 67%

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

Updated 6 months ago

timbertrek • Rank 10.6 • Science 67%

Explore and compare 1K+ accurate decision trees in your browser!

Updated 6 months ago

trviz • Rank 9.7 • Science 67%

A python library for decomposing and visualizing tandem repeat sequences

Updated 6 months ago

VAPOR • Rank 9.5 • Science 67%

VAPOR is the Visualization and Analysis Platform for Ocean, Atmosphere, and Solar Researchers

Updated 6 months ago

UpSetR • Rank 22.1 • Science 54%

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Updated 6 months ago

act • Rank 17.1 • Science 59%

Atmospheric data Community Toolkit - A python based toolkit for exploring and analyzing time series atmospheric datasets

Updated 5 months ago

https://github.com/bluebrain/neuromorphovis • Rank 8.9 • Science 67%

A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

Updated 6 months ago

azely • Rank 7.9 • Science 67%

:zap: Azimuth/elevation calculator for astronomical objects

Updated 6 months ago

mousetrap • Rank 15.8 • Science 59%

Process and Analyze Mouse-Tracking Data

Updated 6 months ago

cloupy • Rank 6.7 • Science 67%

CLOUPY IS NO LONGER SUPPORTED. PLEASE, SEE README. cloupy is a Python library for climatological data downloading, processing and visualizing. The main goal of the library is to help its author in writing a BA thesis. The library is well adapted to academic work - used data sources are reliable and graphs are easy to modify.

Updated 6 months ago

virelay • Rank 9.3 • Science 64%

ViRelAy is a visualization tool for the analysis of data as generated by CoRelAy.

Updated 6 months ago

ggmice • Rank 6.0 • Science 67%

Visualize incomplete and imputed data with the R package `ggmice`

Updated 6 months ago

embedding-atlas • Rank 18.6 • Science 54%

Embedding Atlas is a tool that provides interactive visualizations for large embeddings. It allows you to visualize, cross-filter, and search embeddings and metadata.

Mathematics Sociology
Updated 5 months ago

https://github.com/glue-viz/glue • Rank 13.2 • Science 59%

Linked Data Visualizations Across Multiple Files

Updated 6 months ago

ete3 • Rank 23.0 • Science 49%

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

Updated 6 months ago

xpressplot • Rank 4.7 • Science 67%

A toolkit for navigating and analyzing gene expression datasets

Updated 6 months ago

dea_limma • Rank 4.4 • Science 67%

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.