Projects

Scientific Software

Updated 10 months ago

cblearn — Peer-reviewed • Rank 4.7 • Science 95%

cblearn: Comparison-based Machine Learning in Python - Published in JOSS (2024)

embedding machine-learning machinelearning multidimensional multidimensional-scaling non-metric ordinal scaling scikit-learn

Engineering (40%)

Scientific Software · Peer-reviewed

Updated 10 months ago

nmds_shiny • Science 44%

App for fast NMDS plots

multidimensional-scaling nmds otu-table

Updated 10 months ago

exploring-cybersecurity-data-science • Science 44%

Exploring Cybersecurity Data Science: Dimensionality Reduction and Cluster Analysis

anomaly-detection cluster-analysis cybersecurity dimensionality-reduction factor-analysis-for-mixed-data-types hdbscan iforest isomap multidimensional-scaling pca t-sne umap

Updated 10 months ago

A physics-inspired R package for robust Euclidean embedding of sparse, non-metric dissimilarity data. Particularly powerful for antigenic cartography and viral evolution tracking, but applicable to any domain with incomplete similarity measurements. Published in *Bioinformatics* (2025).

antigenic-cartography euclidean-distances imputation-algorithm multidimensional-scaling non-metric phenotype-prediction

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

cblearn — Peer-reviewed • Rank 4.7 • Science 95%

nmds_shiny • Science 44%

exploring-cybersecurity-data-science • Science 44%

topolow • Science 67%