Scientific Software
Updated 6 months ago

VIP — Peer-reviewed • Rank 15.1 • Science 95%

VIP: A Python package for high-contrast imaging - Published in JOSS (2023)

Mathematics Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

BetaML — Peer-reviewed • Rank 10.5 • Science 95%

BetaML: The Beta Machine Learning Toolkit, a self-contained repository of Machine Learning algorithms in Julia - Published in JOSS (2021)

Scientific Software
Updated 6 months ago

ExpFamilyPCA.jl — Peer-reviewed • Rank 4.5 • Science 100%

ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis - Published in JOSS (2025)

Scientific Software
Updated 6 months ago

xeofs — Peer-reviewed • Rank 14.9 • Science 67%

xeofs: Comprehensive EOF analysis in Python with xarray - Published in JOSS (2024)

Mathematics Artificial Intelligence and Machine Learning Engineering
Scientific Software · Peer-reviewed
Updated 6 months ago

pca • Rank 20.3 • Science 54%

pca: A Python Package for Principal Component Analysis.

Updated 5 months ago

plnmodels • Rank 12.8 • Science 59%

A collection of Poisson lognormal models for multivariate count data analysis

Updated 5 months ago

h2o • Rank 27.7 • Science 36%

H2O is an Open Source, Distributed, Fast & Scalable Machine Learning Platform: Deep Learning, Gradient Boosting (GBM) & XGBoost, Random Forest, Generalized Linear Modeling (GLM with Elastic Net), K-Means, PCA, Generalized Additive Models (GAM), RuleFit, Support Vector Machine (SVM), Stacked Ensembles, Automatic Machine Learning (AutoML), etc.

Updated 6 months ago

knrscore • Rank 4.9 • Science 54%

KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.

Updated 6 months ago

SNPRelate • Rank 19.5 • Science 39%

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

Updated 5 months ago

pcaone • Rank 6.8 • Science 49%

Window based randomized singular value decomposition (winSVD)

Updated 6 months ago

unsupervised_analysis • Rank 4.7 • Science 49%

A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

Updated 6 months ago

bibmon • Rank 6.9 • Science 41%

Python package that provides predictive models for fault detection, soft sensing, and process condition monitoring.

Updated 5 months ago

msmbuilder • Rank 14.4 • Science 20%

:building_construction: Statistical models for biomolecular dynamics :building_construction:

Updated 5 months ago

r-sparsepca • Rank 13.1 • Science 20%

Sparse Principal Component Analysis (SPCA) using Variable Projection

Updated 6 months ago

pca-book • Rank 3.7 • Science 13%

Source files for a book on Principal component analysis

Updated 5 months ago

kerntools • Science 36%

Kernel Functions and Tools for Machine Learning Applications

Updated 5 months ago

https://github.com/cheminfo/compass • Science 10%

Strategy for improved characterisation of human metabolic phenotypes using a COmbined Multiblock Principal components Analysis with Statistical Spectroscopy (COMPASS)

Scientific Software
Updated 6 months ago

DiRe - JAX — Peer-reviewed • Science 93%

DiRe - JAX: A JAX based Dimensionality Reduction Algorithm for Large-scale Data - Published in JOSS (2025)

Updated 5 months ago

https://github.com/aariq/pca-vs-pls • Science 23%

Research compendium for "Using the right tool for the job: understanding the difference between unsupervised and supervised analyses of multivariate ecological data."

Updated 6 months ago

complexpca • Science 67%

a ggplot PCA with complex annotation

Updated 5 months ago

https://github.com/danymukesha/pca-pwa • Science 13%

simplified manner for insights and decision-making by visualizing complex relationships with PCA web application

Updated 5 months ago

RelimpPCR • Science 13%

Relative Importance PCA Regression in R

Updated 22 days ago

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis • Science 87%

OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)

Updated 5 months ago

https://github.com/databio/cocoa • Science 26%

Annotating epigenetic variation among samples with region sets in R