Projects | Open Source Science

Projects

Updated 6 months ago

cnakepit • Science 67%

A Snakemake pipeline for copy number variant calling without normal tissue samples

bioinformatics bwa cna cnv cnvkit conda copynumbervariation mutect2 panels purecn sequencing-data snakemake targeted-sequencing

Updated 6 months ago

fair_gatk_mutect2 • Science 44%

Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

fair gatk-bestpractices mutect2 reproducible-workflows snakemake snakemake-workflow variant-calling