biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
dsd-vocabulary
The Data Source Description Vocabulary (DSD) allows the representation of data sources and their internal structure independently of their type.
biodt-fair
Documentation, resources, and other materials related to FAIR and open science from the BioDT project.
howfairis
Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations
birdhouse-deploy
Scripts and configurations to deploy the various birds and servers required for a full-fledged production platform
fair-for-busy-biologists
A short course on FAIR and data managment for biomedical research
nmrformd
NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.
https://github.com/bhklab/bhklab-project-template
Setup FAIR and DMP compliant projects with one command
https://github.com/bayer-group/colid-setup
The setup repository is part of the Corporate Linked Data Catalog - short: COLID - application. It helps setting up a local environment based on Docker Compose.
https://github.com/bayer-group/colid-data-marketplace-frontend
The Data Marketplace frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. Users can search for registered resources in COLID. It provides a search bar, aggregation filters and search result displaying including term highlighting.
https://github.com/bayer-group/colid-search-service
The search service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It makes the data findable and provides indexing and search functionalities based on Elasticsearch.
https://github.com/bayer-group/colid-editor-frontend
The editor frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers user an metadata based user interface to register resources in COLID.
https://github.com/bayer-group/colid-scheduler-service
The scheduler service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It sets up recurring jobs for user notifications and analytics.
https://github.com/bayer-group/colid-registration-service
The registration service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is the central microservice to register resources in the triplestore.
https://github.com/bayer-group/colid-appdata-service
The appdata service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It maintains the user data and application settings.
https://github.com/bayer-group/colid-indexing-crawler-service
The Indexing Crawler Service (ICS) repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is responsible to extract data from a RDF storage system, transform and enrich the data and finally to send it via a message queue to the DMP Webservice for indexing.
reproducible-research
Reproducible research - Preparing code to be usable by you and others in the future
bpo
BPO: An application ontology for extending interoperability for in-vivo bioassay protocols relevant to antimicrobial resistance (AMR) drug discovery.
fair_gatk_mutect2
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
software_lifecycle_planning
FAIR2 for research software Training program at the U. of Sheffield
fair_ebaii_n2
Science ouverte et principes FAIR dans un projet de bioinformatique
calipytion
🧑🔬 Tool for managing and analyzing data from calibration measurements for subsequent concentration calculaton
carto-lab-docker
A versioned Docker container running a pre-configured JupyterLab for reproducible spatial data science. Officially supported by the Research Data Centre (FDZ) at IOER. This is the community mirror for issues, discussions, and contributions.
fair-python-cookiecutter-demo
Live demo to demonstrate a repository created from the fair-python-cookiecutter template.
fair_stats_aggregator
This repository hosts a prototype tool designed to analyze and aggregate FAIR (Findable, Accessible, Interoperable, and Reusable) statistics for a list of Digital Object Identifiers (DOIs).
zarp-cli
A user-friendly command-line interface for the ZARP RNA-seq analysis workflow
https://github.com/au-research/visible-research-software
The Visible Research Software Interest Group is a space for community conversation, i.e. an online forum for people within Australasian Research Institutions to discuss visibility of research software, e.g. citation, publication, and FAIRification. https://sites.google.com/ardc.edu.au/visible-research-software
the-fair-cookbook
The FAIR cookbook, containing recipes to make your data more FAIR. Find the rendered version on:
https://github.com/b-cubed-eu/hackathon-project-7
This space is dedicated to hosting "Project 7 - Interoperable eLTER Standard Observation variables for Biosphere" as part of the B-Cubed Hackathon 2024 - Hacking Biodiversity Data Cubes for Policy.
pit-service
Typed PID Maker – Create, resolve and modify PIDs with typed constraints, e.g. for FAIR DOs.
seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
fair-amd-oct-paper-code
Code associated with the paper on FAIR assessment of AMD-related datasets containing OCT data
https://github.com/au-research/your-first-step-to-fair-archived
Overview of FAIR principles, including the easiest way to make a simple dataset FAIR
https://github.com/au-research/your-first-step-to-fair
Overview of FAIR principles, including the easiest way to make a simple dataset FAIR
codefair-app
Your coding assistant to make research software reusable without breaking a sweat!
mathmoddb
The repo for MathModDB, the model ontology and knowledge graph developed by MaRDI TA4
workshop_bios_oceanographic_data
Repository holding lesson on Data Management Basics. See webpage for rendered view: https://bcodmo.github.io/workshop_bios_oceanographic_data/
fair_genome_indexer
Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools
fair_ontologies
Code for FOOPS! the OEG FAIR assessment tool for ontologies and vocabularies
