Projects

Updated 9 months ago

amici • Rank 17.6 • Science 77%

High-performance sensitivity analysis for large ordinary differential equation models

adjoint-sensitivities cvode cvodes differentialequations forward-sensitivities hacktoberfest idas kinetic-modeling mechanistic-models modeling ode parameter-estimation petab pysb python sbml sensitivities sensitivity-analysis simulation systemsbiology

Updated 9 months ago

galibrate • Rank 6.3 • Science 54%

Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

genetic-algorithm model-calibration optimization optimizer parameter-estimation pysb python3 systems-biology

Updated 9 months ago

pysb-units • Science 67%

PySB add-on providing utilities to add units to models and perform dimensional analysis.

mechanistic-modeling physics-based-simulation pkpd-modelling pysb pysb-modeling reaction-models systems-biology

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Open Source Science

amici • Rank 17.6 • Science 77%

galibrate • Rank 6.3 • Science 54%

pysb-units • Science 67%