Pooch
Pooch: A friend to fetch your data files - Published in JOSS (2020)
matchms - processing and similarity evaluation of mass spectrometry data.
matchms - processing and similarity evaluation of mass spectrometry data. - Published in JOSS (2020)
PyMatting
PyMatting: A Python Library for Alpha Matting - Published in JOSS (2020)
TorchGAN
TorchGAN: A Flexible Framework for GAN Training and Evaluation - Published in JOSS (2021)
Verde
Verde: Processing and gridding spatial data using Green’s functions - Published in JOSS (2018)
cuallee
cuallee: A Python package for data quality checks across multiple DataFrame APIs - Published in JOSS (2024)
icepyx
icepyx: querying, obtaining, analyzing, and manipulating ICESat-2 datasets - Published in JOSS (2023)
eemont
eemont: A Python package that extends Google Earth Engine - Published in JOSS (2021)
quimb
quimb: A python package for quantum information and many-body calculations - Published in JOSS (2018)
toqito -- Theory of quantum information toolkit
toqito -- Theory of quantum information toolkit: A Python package for studying quantum information - Published in JOSS (2021)
PyClustering
PyClustering: Data Mining Library - Published in JOSS (2019)
piecewise-regression (aka segmented regression) in Python
piecewise-regression (aka segmented regression) in Python - Published in JOSS (2021)
VeridicalFlow
VeridicalFlow: a Python package for building trustworthy data science pipelines with PCS - Published in JOSS (2022)
Cadabra2
Cadabra2: computer algebra for field theory revisited - Published in JOSS (2018)
timeseriesflattener
timeseriesflattener: A Python package for summarizing features from (medical) time series - Published in JOSS (2023)
ParMOO
ParMOO: A Python library for parallel multiobjective simulation optimization - Published in JOSS (2023)
MemCNN
MemCNN: A Python/PyTorch package for creating memory-efficient invertible neural networks - Published in JOSS (2019)
Bodge
Bodge: Python package for efficient tight-binding modeling of superconducting nanostructures - Published in JOSS (2024)
KALMUS
KALMUS: tools for color analysis of films - Published in JOSS (2021)
OMEGA-Py
OMEGA-Py: Python Tools for OMEGA Data - Published in JOSS (2024)
scholarly
Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!
PyFstat
PyFstat: a Python package for continuous gravitational-wave data analysis - Published in JOSS (2021)
kalepy
kalepy: a Python package for kernel density estimation, sampling and plotting - Published in JOSS (2021)
PII-Codex
PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
Crowsetta
Crowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data. - Published in JOSS (2023)
pref_voting
pref_voting: The Preferential Voting Tools package for Python - Published in JOSS (2025)
Pyrgg
Pyrgg: Python Random Graph Generator - Published in JOSS (2017)
Manif
Manif: A micro Lie theory library for state estimation in robotics applications - Published in JOSS (2020)
Caliban
Caliban: Docker-based job manager for reproducible workflows - Published in JOSS (2020)
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models
Model dispersion with PRISM; an alternative to MCMC for rapid analysis of models - Published in JOSS (2019)
madupite
madupite: A High-Performance Distributed Solver for Large-Scale Markov Decision Processes - Published in JOSS (2025)
humanleague
humanleague: a C++ microsynthesis package with R and python interfaces - Published in JOSS (2018)
HiPart
HiPart: Hierarchical Divisive Clustering Toolbox - Published in JOSS (2023)
neworder
neworder: a dynamic microsimulation framework for Python - Published in JOSS (2021)
mmappickle
mmappickle: Python 3 module to store memory-mapped numpy array in pickle format - Published in JOSS (2018)
Ecos
Ecos: An accessible and intuitive co-simulation framework - Published in JOSS (2025)
labjack-controller
labjack-controller: Robust and Easy Data Collection with Labjack T-Series DAQs in Python - Published in JOSS (2019)
pyMultiFit: A Python library for fitting data with multiple models
pyMultiFit: A Python library for fitting data with multiple models - Published in JOSS (2025)
Local clustering
Local clustering - Published in JOSS (2018)
Eniric
Eniric: Extended NIR Information Content - Published in JOSS (2019)
deepCR
deepCR: Cosmic Ray Rejection with Deep Learning - Published in JOSS (2019)
h3ppy
h3ppy: An open-source Python package for modelling and fitting H$_3^+$ spectra - Published in JOSS (2025)
hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications
hsi-wizard: A magical open-source Python package for medical hyperspectral imaging applications - Published in JOSS (2025)
Opycleid
Opycleid: A Python package for transformational music theory - Published in JOSS (2018)
rFBP
rFBP: Replicated Focusing Belief Propagation algorithm - Published in JOSS (2020)
PyGModels
PyGModels: A Python package for exploring Probabilistic Graphical Models with Graph Theoretical Structures - Published in JOSS (2021)
pySRURGS - a python package for symbolic regression by uniform random global search
pySRURGS - a python package for symbolic regression by uniform random global search - Published in JOSS (2019)
Py-school-match
Py-school-match: Matching algorithms to assign students to schools - Published in JOSS (2019)
igneous-pipeline
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
DMT-core
DMT-core: A Python Toolkit for Semiconductor Device Engineers - Published in JOSS (2022)
decaylanguage
Package to parse decay files, describe and convert particle decays between digital representations.
ShakeNBreak
ShakeNBreak: Navigating the defect configurational landscape - Published in JOSS (2022)
speasy
Space Physics made EASY! A simple Python package to deal with main Space Physics WebServices (CDA,SSC,AMDA,..)
georasters
GeoRasters is a Python module that provides a fast and flexible tool to work with GIS raster files.
atropos
An NGS read trimming tool that is specific, sensitive, and speedy. (production)
undate
A Python library for working with fuzzy, partial, or otherwise uncertain dates
torchfl
A Python library for rapid prototyping, experimenting, and logging of federated learning using state-of-the-art models and datasets. Built using PyTorch and PyTorch Lightning.
qha
A Python package for calculating thermodynamic properties under quasi-harmonic approximation, using data from ab-initio calculations
lvlspy
A python package developed to handle quantum levels which can act as a basis for larger simulations
cpprb
Fast Flexible Replay Buffer Library (Mirror repository of https://gitlab.com/ymd_h/cpprb)
cvmfs-venv
Example implementation of getting a Python virtual environment to work with CVMFS LCG views
sqsgenerator
A command line tool written in Python/C++ for finding optimized SQS structures
the-plunging-flow-by-3d-les
The Plunging of Hyperpycnal Plumes on Tilted Bed by Three-Dimensional Large-Eddy Simulations
https://github.com/alan-turing-institute/clevercsv
CleverCSV is a Python package for handling messy CSV files. It provides a drop-in replacement for the builtin CSV module with improved dialect detection, and comes with a handy command line application for working with CSV files.
jsonargparse
Implement minimal boilerplate CLIs derived from type hints and parse from command line, config files and environment variables
mlconjug3
A Python library to conjugate verbs in French, English, Spanish, Italian, Portuguese and Romanian (more soon) using Machine Learning techniques.
pyrfu
Python routines to work with space data, particularly with MMS data. Also some general plasma routines.
autogoal
A Python framework for program synthesis with a focus on Automated Machine Learning.
forecast-tools
forecast_tools provides fundamental tools to support the forecasting process in python
pynamer
A pseudo pip-search utility to ascertain if a package name is available in the PyPI repository and 'register' it
acttensor-tf
ActTensor: Activation Functions for TensorFlow. https://pypi.org/project/ActTensor-tf/ Authors: Pouya Ardehkhani, Pegah Ardehkhani
rich
Rich is a Python library for rich text and beautiful formatting in the terminal.
scikit-hep
Metapackage of Scikit-HEP project data analysis packages for Particle Physics.
cloupy
CLOUPY IS NO LONGER SUPPORTED. PLEASE, SEE README. cloupy is a Python library for climatological data downloading, processing and visualizing. The main goal of the library is to help its author in writing a BA thesis. The library is well adapted to academic work - used data sources are reliable and graphs are easy to modify.
commonpy
Collection of common Python utility functions and classes used in other Caltech Library programs.
topostats
An AFM image analysis program to batch process data and obtain statistics from images
napari-time-series-plotter
A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.
