Projects

Scientific Software

Updated 9 months ago

FGTpartitioner — Peer-reviewed • Rank 1.8 • Science 95%

FGTpartitioner: A rapid method for parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets - Published in JOSS (2020)

ancestry genome-alignment phylogenomics recombination

Materials Science (40%)

Scientific Software · Peer-reviewed

Updated 9 months ago

ReLERNN • Rank 6.1 • Science 46%

Recombination Landscape Estimation using Recurrent Neural Networks

deep-learning population-genomics recombination recurrent-neural-networks

Updated 9 months ago

mcorr • Rank 8.6 • Science 10%

Inferring bacterial recombination rates from large-scale sequencing datasets.

correlation recombination

Updated 9 months ago

https://github.com/cmkobel/gbgc • Science 23%

🦠💪 Investigating gBGC in Rhizobium leguminosarum

microbiology msc-thesis recombination

Updated 9 months ago

arete • Science 54%

AMR/VF LGT focused bacterial genomics analysis workflow

antimicrobial-genes-annotation antimicrobial-resistance bacterial-genome-analysis genomic-islands-prediction lateral-gene-transfer metagenomics mobile-genetic-elements nextflow pangenomics pipeline poppunk recombination reproducible-research rgi virulence-factor

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

FGTpartitioner — Peer-reviewed • Rank 1.8 • Science 95%

ReLERNN • Rank 6.1 • Science 46%

mcorr • Rank 8.6 • Science 10%

https://github.com/cmkobel/gbgc • Science 23%

arete • Science 54%