GitHub
https://github.com/cambiotraining/stats-mixed-effects-models
https://github.com/camilogarciabotero/biosimplex.jl
Representing BioSequences as Simplex numerical matrix
https://github.com/captaincodercool/captaincodercool
Welcome to CAPTAINCODERCOOL’s GitHub! Dive into my repository of diverse projects ranging from AI-driven tools to full-stack web applications. Discover code, insights, and innovations crafted to push the boundaries of technology and software development.
https://github.com/carmonalab/genenmf
Methods to discover gene programs on single-cell data
https://github.com/carmonalab/stacas
R package for semi-supervised single-cell data integration
https://github.com/carperai/trlx
A repo for distributed training of language models with Reinforcement Learning via Human Feedback (RLHF)
https://github.com/carv-ics-forth/hpk
HPK allows running Kubernetes applications within HPC by translating deployments to Slurm and Singularity/Apptainer
https://github.com/casus/umod
Urine Microscopy Open Dataset and its validation
https://github.com/catalyst-cooperative/open-grid-emissions
Tools for producing high-quality hourly generation and emissions data for U.S. electric grids
https://github.com/cbg-ethz/oncotreevis
An interactive graphical user interface for visualizing mutation tree cohorts.
https://github.com/cdk/cdkbook
Groovy Cheminformatics with the Chemistry Development Kit
https://github.com/cea-metrocarac/images_alignment
Application to re-align images
https://github.com/centre-for-humanities-computing/graphematics
A collection of string processing and visualization scripts following the steps outlined in the "Handbuch zur graphematischen Rekonstruktion vormoderner Schreibsprachen".
https://github.com/ceresbarros/forestharvest-spadesmodule
A toy model of forest harvest by forest age and type
https://github.com/cfn-softbio/vision
Virtual Scientific Companion for Synchrotron Beamlines
https://github.com/cfosseprez/turning_points
Module to find and analyze turning points in trajectories
https://github.com/cgcl-codes/graphinstruct
The benchmark proposed in paper: GraphInstruct: Empowering Large Language Models with Graph Understanding and Reasoning Capability
https://github.com/cgre-aachen/gempy-gallery
Collection of gempy models built and shared by the community
https://github.com/chains-project/ddc4j
Diverse double compiling for Java. Bachelor thesis Elias and Eskil.
https://github.com/chemle/emle-engine-paper
Supporting data for emle-engine publication
https://github.com/chemprop/chemprop_benchmark
Chemprop benchmarking scripts and data for v1
https://github.com/chen-yang-liu/awesome-rs-spatiotemporal-vlms
🔥Remote Sensing Spatio-Temporal Vision-Language Models: A Comprehensive Survey
https://github.com/chendaniely/collaborative-lesson-delivery
"10 Rules" paper on collaborative lesson delivery
https://github.com/chewkeanho/license-rlos
[MIRROR] The published (Holloway) Chew, Kean Ho's research & libre license files for product licensing purposes.
https://github.com/chiang-yuan/culsm
CUDA C++ code implementing GPU-accelerated Lattice Spring Model (CuLSM) simulations.
https://github.com/choderalab/missense-kinase-toolkit
A package to facilitate structure- and sequence-based ML for clinically relevant missense human kinase property prediction
https://github.com/choderalab/espaloma
Extensible Surrogate Potential of Ab initio Learned and Optimized by Message-passing Algorithm 🍹https://arxiv.org/abs/2010.01196
https://github.com/choosehappy/quickannotator
An open-source digital pathology based rapid image annotation tool
https://github.com/christineaevans/s-cap_mining_emissions
Carbon emissions estimation projects.
https://github.com/christophh/in-lineage
Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
https://github.com/chroma-citi/namosim
A mobile-robot navigation planner for navigating among movable obstacles
https://github.com/cidgoh/virus-mvp
VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and globally.
https://github.com/cienciadedatosysalud/indicatorbuilder
Effortlessly generate indicator calculation script templates.
https://github.com/cipollinidavide/fusedmembrain
"Fused-MemBrain: a spiking processor combining CMOS and self-assembled memristive networks", Cipollini et al., 2024, https://doi.org/10.48550/arXiv.2411.19353
https://github.com/cjabradshaw/aussoilhg
Predicting continental distribution of soil mercury concentration in Australia
https://github.com/clavellab/maldipickr_manuscript
Worfklow for the data analysis in the maldipickr manuscript
https://github.com/clavellab/hibc
Shiny application to display data and metadata for The Human Intestinal Bacterial Collection (HiBC)
https://github.com/clesperanto/clic
GPU-accelerated Image Processing library for C++
https://github.com/clima/parameterestimocean.jl
🎲 Parameter estimation for Oceananigans using EnsembleKalmanProcesses
https://github.com/climdyn/auto-auto
An AUTO-07p automatic search algorithm codebase
https://github.com/cmbant/planckearlylcdm
Planck parameter chains independent of late-time cosmology
https://github.com/cmelab/pl-validation
Verifying that the persistence length calculations are independent of each other.
https://github.com/cmkobel/holodoublevu
🪢👀 Generalization and parametrization of the supacow. Phase 1: Proteomics.
https://github.com/cn-tu/nta-meta-analysis-editor
Editor for the NTARC data format
https://github.com/cnoctave/octave_zstd
The octave_zstd package provides functions for compress and decompress about ZSTD format.
https://github.com/cnr-igag/cle-tools
Tools for Italian Emergency Limit Condition analysis
https://github.com/compevol/ccd
Conditional Clade Distribution package for BEAST 2
https://github.com/compomics/im2deep
Collisional cross-section prediction for modified and multiconformational peptides
https://github.com/computational-psychology/ecvp2025-mlds-mlcm-tutorial
Tutorial ECVP 2025: MLDS and MLCM: two scaling methods to study stimulus appearance
https://github.com/computationalpsychiatry/pyhgf
PyHGF: A neural network library for predictive coding
https://github.com/computationalpsychiatry/physio-test-reference-results
Reference Results for PhysIO Unit and Integration Tests
https://github.com/conect2ai/teda-bootcamp
Este repositório contém os dados, códigos e figuras gerados no IEEE PES Bootcamp sobre o framework TEDA
https://github.com/core-unit-bioinformatics/workflow-smk-ont-basecalling-correction
Workflow for the basecalling and error correction of ONT data.
https://github.com/cosmaadrian/nli-stress-test
Official repository for the EMNLP 2024 paper "How Hard is this Test Set? NLI Characterization by Exploiting Training Dynamics"
https://github.com/cosmaadrian/acumen-template
The deep learning researcher's starter kit
https://github.com/cqcl/benchmarking_pytket_cutensornet
This repository contains the scripts and results for the submission of pytket-cutensornet to the simulator benchmarking challenge.
https://github.com/cremerlab/density_maintenance
Active research repository for our work on understanding cell size regulation and cellular composition.
https://github.com/cryotools/glof-modeling
Fully three-dimensional GLOF modeling using computational fluid dynamics software
https://github.com/csiro/phylocontrol-geninput
Generate inputs for PhyloControl app
https://github.com/csiro-hydroinformatics/pygme
Python Generic Modelling Engine (PyGME): A simple python package to design, run and calibrate models used in environmental sciences
https://github.com/csiro-hydroinformatics/hydrodiy
hydrodiy is a set of tools to perform standard data analysis in hydrology. The package is structured around typical tasks: io, data checking, statistical analysis, gis processing and plotting.
dsmn
Discovering life’s directed metabolic (sub)paths to interpret biochemical markers
shufflebench
A benchmark for generic, large-scale shuffle operations on continuous stream of data, implemented with state-of-the-art stream processing frameworks.
automatic-grading-using-llm
A collection of LLM-based studies aimed at developing automated grading solutions for my master's project.
adeperfectideals
Macaulay2 code for producing examples of perfect ideals using representation theory
ap-svm-data-cleaning
The Affinity Propagation (AP) + Support Vector Machine (SVM) data cleaning model code for time-series signals generated from Germanium detectors is found here.
maco
An unofficial pytorch implementation of "Unlocking Feature Visualization for Deeper Networks with MAgnitude Constrained Optimization" [Fel+, NeurIPS 2023].
agda-algebras
The Agda Universal Algebra Library (html docs available at the url below)