GitHub
https://github.com/cbg-ethz/oncotreevis
An interactive graphical user interface for visualizing mutation tree cohorts.
https://github.com/cdk/cdkbook
Groovy Cheminformatics with the Chemistry Development Kit
https://github.com/cea-metrocarac/images_alignment
Application to re-align images
https://github.com/centre-for-humanities-computing/graphematics
A collection of string processing and visualization scripts following the steps outlined in the "Handbuch zur graphematischen Rekonstruktion vormoderner Schreibsprachen".
https://github.com/ceresbarros/forestharvest-spadesmodule
A toy model of forest harvest by forest age and type
https://github.com/cfn-softbio/vision
Virtual Scientific Companion for Synchrotron Beamlines
https://github.com/cfosseprez/turning_points
Module to find and analyze turning points in trajectories
https://github.com/cgcl-codes/graphinstruct
The benchmark proposed in paper: GraphInstruct: Empowering Large Language Models with Graph Understanding and Reasoning Capability
https://github.com/cgre-aachen/gempy-gallery
Collection of gempy models built and shared by the community
https://github.com/chains-project/ddc4j
Diverse double compiling for Java. Bachelor thesis Elias and Eskil.
https://github.com/chemle/emle-engine-paper
Supporting data for emle-engine publication
https://github.com/chemprop/chemprop_benchmark
Chemprop benchmarking scripts and data for v1
https://github.com/chen-yang-liu/awesome-rs-spatiotemporal-vlms
🔥Remote Sensing Spatio-Temporal Vision-Language Models: A Comprehensive Survey
https://github.com/chendaniely/collaborative-lesson-delivery
"10 Rules" paper on collaborative lesson delivery
https://github.com/chewkeanho/license-rlos
[MIRROR] The published (Holloway) Chew, Kean Ho's research & libre license files for product licensing purposes.
https://github.com/chiang-yuan/culsm
CUDA C++ code implementing GPU-accelerated Lattice Spring Model (CuLSM) simulations.
https://github.com/choderalab/missense-kinase-toolkit
A package to facilitate structure- and sequence-based ML for clinically relevant missense human kinase property prediction
https://github.com/choderalab/espaloma
Extensible Surrogate Potential of Ab initio Learned and Optimized by Message-passing Algorithm 🍹https://arxiv.org/abs/2010.01196
https://github.com/choosehappy/quickannotator
An open-source digital pathology based rapid image annotation tool
https://github.com/christineaevans/s-cap_mining_emissions
Carbon emissions estimation projects.
https://github.com/christophh/in-lineage
Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
https://github.com/chroma-citi/namosim
A mobile-robot navigation planner for navigating among movable obstacles
https://github.com/cidgoh/virus-mvp
VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and globally.
https://github.com/cienciadedatosysalud/indicatorbuilder
Effortlessly generate indicator calculation script templates.
https://github.com/cipollinidavide/fusedmembrain
"Fused-MemBrain: a spiking processor combining CMOS and self-assembled memristive networks", Cipollini et al., 2024, https://doi.org/10.48550/arXiv.2411.19353
https://github.com/cjabradshaw/aussoilhg
Predicting continental distribution of soil mercury concentration in Australia
https://github.com/clavellab/maldipickr_manuscript
Worfklow for the data analysis in the maldipickr manuscript
https://github.com/clavellab/hibc
Shiny application to display data and metadata for The Human Intestinal Bacterial Collection (HiBC)
https://github.com/clesperanto/clic
GPU-accelerated Image Processing library for C++
https://github.com/clima/parameterestimocean.jl
🎲 Parameter estimation for Oceananigans using EnsembleKalmanProcesses
https://github.com/climdyn/auto-auto
An AUTO-07p automatic search algorithm codebase
https://github.com/cmbant/planckearlylcdm
Planck parameter chains independent of late-time cosmology
https://github.com/cmelab/pl-validation
Verifying that the persistence length calculations are independent of each other.
https://github.com/cmkobel/holodoublevu
🪢👀 Generalization and parametrization of the supacow. Phase 1: Proteomics.
https://github.com/cn-tu/nta-meta-analysis-editor
Editor for the NTARC data format
https://github.com/cnoctave/octave_zstd
The octave_zstd package provides functions for compress and decompress about ZSTD format.
https://github.com/cnr-igag/cle-tools
Tools for Italian Emergency Limit Condition analysis
https://github.com/compevol/ccd
Conditional Clade Distribution package for BEAST 2
https://github.com/compomics/im2deep
Collisional cross-section prediction for modified and multiconformational peptides
https://github.com/computational-psychology/ecvp2025-mlds-mlcm-tutorial
Tutorial ECVP 2025: MLDS and MLCM: two scaling methods to study stimulus appearance
https://github.com/computationalpsychiatry/pyhgf
PyHGF: A neural network library for predictive coding
https://github.com/computationalpsychiatry/physio-test-reference-results
Reference Results for PhysIO Unit and Integration Tests
https://github.com/conect2ai/teda-bootcamp
Este repositório contém os dados, códigos e figuras gerados no IEEE PES Bootcamp sobre o framework TEDA
https://github.com/core-unit-bioinformatics/workflow-smk-ont-basecalling-correction
Workflow for the basecalling and error correction of ONT data.
https://github.com/cosmaadrian/nli-stress-test
Official repository for the EMNLP 2024 paper "How Hard is this Test Set? NLI Characterization by Exploiting Training Dynamics"
https://github.com/cosmaadrian/acumen-template
The deep learning researcher's starter kit
https://github.com/cqcl/benchmarking_pytket_cutensornet
This repository contains the scripts and results for the submission of pytket-cutensornet to the simulator benchmarking challenge.
https://github.com/cremerlab/density_maintenance
Active research repository for our work on understanding cell size regulation and cellular composition.
https://github.com/cryotools/glof-modeling
Fully three-dimensional GLOF modeling using computational fluid dynamics software
https://github.com/csiro/phylocontrol-geninput
Generate inputs for PhyloControl app
https://github.com/csiro-hydroinformatics/pygme
Python Generic Modelling Engine (PyGME): A simple python package to design, run and calibrate models used in environmental sciences
https://github.com/csiro-hydroinformatics/hydrodiy
hydrodiy is a set of tools to perform standard data analysis in hydrology. The package is structured around typical tasks: io, data checking, statistical analysis, gis processing and plotting.
https://github.com/cthoyt/pubmed-downloader
Automate downloading and processing PubMed in bulk
https://github.com/cthoyt/orcid_downloader
Get ORCID in bulk, free it from XML, and semantically enrich it
https://github.com/ctu-iig/green-scheduling-bab
The repository contains codes for paper "Green Scheduling with Time-of-Use Tariffs and Machine States: Optimizing Energy Cost via Branch-and-Bound and Bin Packing Strategies"
https://github.com/cusyio/python4datascience-de
Schulungsmaterialen für den Aufbau und die Nutzung einer Forschungsinfrastruktur auf Basis von Jupyter Notebooks: https://cusy.io/de/seminare
https://github.com/cwi-dis/ismar_pointcloud_eyetracking
The office repo for QAVA-DPC: Eye-Tracking Based Quality Assessment and Visual Attention Dataset for Dynamic Point Cloud in 6 DoF ISMAR 2023
https://github.com/cwida/alp
ALP: Adaptive Lossless Floating-Point Compression
https://github.com/cwwhitney/certification_prioritization
Supplementary Materials for 'Prioritizing certification interventions to improve climate change adaptation and mitigation outcomes - a case study for banana plantations'
https://github.com/cwwhitney/agroforestry-insurance
Scripts and files for Agroforestry Insurance related issues and ideas
https://github.com/cyberagentailab/adparaphrase-v2.0
This repository contains data for our paper "AdParaphrase v2.0: Generating Attractive Ad Texts Using a Preference-Annotated Paraphrase Dataset".
https://github.com/cyberagentailab/adparaphrase
This repository contains data for our paper "AdParaphrase: Paraphrase Dataset for Analyzing Linguistic Features toward Generating Attractive Ad Texts".
https://github.com/dagdpz/body_signals_analysis
Analysis of body signals: ECG, breathing (CAP), PPG
https://github.com/dagmarfraser/velocity-curvature-power-law-simulation
Simulation of repository velocity-curvature-power-law-protocol across a comprehensive biologically informed parameter space
https://github.com/dahong67/gcpdecompositions.jl
Generalized CP Tensor Decompositions
https://github.com/danforthcenter/kig_v2
Updated version of the KIG list using OrthoFinder
https://github.com/danillodbs16/fastknill
Fastknill - Am alternative fast computation of Euler charactetistics and Knill curvature from networks
https://github.com/huggingface/segment-anything-2
The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
https://github.com/huggingface/video-dataset-scripts
Collection of scripts to build small-scale datasets for fine-tuning video generation models.