GitHub
macchiato
Macchiato is a Petri Nets implementation for Python 3 with a focus of usability and scriptability.
fair_genome_indexer
Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools
VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer
VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer - Published in JOSS (2025)
mlflow-cnn
Galaxy Redshift Estimation Using Convolutional Neural Networks with MLflow Tracking
awesome-arm-in-smart-agriculture
A collection of literature on the use of association rule mining methods in smart agriculture
ai-attendance-system
An AI-powered attendance system using YOLOv5 for face detection and recognition.
sixarm_ruby_sentry
SixArm.com » Ruby » Sentry simple monitorning of URI links, DNS names, etc.
stars-reproduce-johnson-2021
Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.
daedalus
[UNDER DEVELOPMENT] R package implementing the DAEDALUS model for projecting and optimising health, social, and economic costs of a pandemic.
wneq
wneq is a Python package for computing nuclear equilibria in nucleosynthesis.
sparsematrixcolorings.jl
Coloring algorithms for sparse Jacobian and Hessian matrices
best-practice-documentation
The best-practice documentation of SDSC (mirror from Gitlab)
CloudCovErr
Pipeline for debiasing and improving error bar estimates for photometry on top of structured/filamentary background.
stats-strided-dsvariance
Calculate the variance of a single-precision floating-point strided array using extended accumulation and returning an extended precision result.
hyteg
HyTeG (Hybrid Tetrahedral Grids) is a C++ framework for large scale high performance finite element simulations based on (but not limited to) geometric multigrid. This is a mirror of the official https://i10git.cs.fau.de/hyteg/hyteg. Please create Issues there!
ospx
Extension package to farn, adding support to build OSP (co-)simulation cases using functional mockup units (FMUs).
treemap
Pretty treemap with memory efficient input streaming and output streaming for the SVG image
thread-chunks
A python package for performing memory intensive computations in parallel using chunks and checkpointing.
tb-lod-ttp
This repository will hold all of the code necessary to recreate the analyses presented in "Analysis of time-to-positivity data in tuberculosis treatment studies: Identifying a new limit of quantification" by Dufault et al published in the International Journal of Antimicrobial Agents (2025).
nifreeze
A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)
edirom-online
Edirom Online is a tool for presenting historical-critical music editions in digital form.
extra-sorted-array
A sorted array is a collection of values, arranged in an order.
crisprzip-tool
A GUI for making CRISPR activity predictions with the CRISPRzip model
cohesion-tools
Preprocessing and evaluation scripts for Japanese cohesion analysis
@stanfordspezi/spezi-firebase
Spezi Firebase Abstractions to Develop Spezi-Based Firebase Projects
relatingromanrings_caa2025
rfc3987-syntax
Helper functions to syntactically validate strings according to RFC 3987.
asv
Automatic Source Valuation (ASV) that considers usage of sources in context
yolov5s-ghost-inference-in-cpp-from-scratch
C++ implementation of YOLOv5s-Ghost for object detection, featuring a lightweight neural network with HLS support for FPGA deployment. Performs inference on 640x640 RGB images, with NMS post-processing for 80 COCO classes. Includes Makefile for easy compilation.
tick_surveillance
Bioinformatics pipeline for analysis of amplicon sequencing of tick-associated microbes
blas-ext-base-ndarray-gsum
Compute the sum of all elements in a one-dimensional ndarray.
https://github.com/edoardocostantini/dataverse-uploader
GitHub Action to publish repository content on Dataverse
https://github.com/edoardocostantini/mi-hd
Repository hosting project high-dimensional imputation comparison
blas-ext-base-ndarray-scusum
Compute the cumulative sum of a one-dimensional single-precision floating-point ndarray.
prompt-super
Prompt Super is a fully–featured template prompt that guides large‑language‑model assistants through every stage of academic writing: diagnosis, restructuring, editing, formatting, reproducibility and dissemination.
pyqasm
Python toolkit providing OpenQASM 3 semantic analyzer and utilities for program analysis and compilation.
deeprank-gnn-esm
Graph Network for protein-protein interface including language model features
https://github.com/edoardocostantini/ggmice
Visualize incomplete and imputed data with the R package `ggmice`
listofethicalgooglesearchdorks
A curated list of ethical and safe google search dorks to improve productivity.
https://github.com/edoardocostantini/paper-template
My Rnw template for scientific papers
pucminas-aeds2-assignments
Content developed throughout the Data Structures and Algorithms II course in the second semester of the Computer Science program at PUC Minas, including exercises, activities, and other implementations.
amplicon-nf
Amplicon genome assembly for ARTIC style primer schemes using Nextflow.