GitHub
wrangling-transcriptomics
A Carpentries-style lesson on transcriptomics, adapted from the wrangling-genomics lesson in the DC/Genomics workshop.
paper-da-ieee-codit-2025
Paper IEEE CoDIT 2025 - Arend/Singh Padda/Schwung - "Online-adaptive PID control using Reinforcement Learning"
k_means_thesis
Computation application for the k-means algorithm is an unsupervised clustering technique that organizes data into clusters based on similarity. It iteratively assigns data points to centroids and recalculates centroids based on the average of assigned points until the variance between points and centroids is minimized.
Speech-Recognition-using-WhisperAI
Multilingual Speech Recognition that uses WhisperAI that can extract words and their timestamps and put them into a .TextGrid file.
ppl-cc-ti1-2023-2-g-timenetflix
ti-1-ppl-cc-m-20232-timenetflix created by GitHub Classroom
golden-agents-notary-network
RDF version of the Notary Network (Notarissennetwerk, https://notarissennetwerk.nl/), a structured version of the Repertorium van Notarissen.
fabulasmitologicas
A collection of Golden Age poems in Spanish in TEI and plain text
thereminq-classiq
ThereminQ CLassiQ - QuantOPS : Orchestrate Qrack, Bonsai, Qimcifa and Tipsy in OpenCL, VCL and CUDA with an X WebUI
rnaseq
nf-core/rnaseq fork; RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
distillnerf
[NeurIPS 2024] DistillNeRF: Perceiving 3D Scenes from Single-Glance Images by Distilling Neural Fields and Foundation Model Features
https://github.com/digital-porous-media/dpm_docs
Digital Rocks Portal Documentation (Demo)
https://github.com/digital-porous-media/dpm_srg
Multi-Seeded Region Growing Segmentation
most-different-text-selection
Use embedding data from LLMs to determine the most different text in a given corpus.
extendeddfml
R package implementing the Extended Dynamic Factor Machine Learner multivariate forecasting method
https://github.com/digital-porous-media/dpm_fno_workshop
2025 Workshop on Fourier Neural Operators
https://github.com/digital-work-lab/handbook
📖 The handbook of the digital work lab
https://github.com/digital-work-lab/labot
LaBot is a bot facilitating work in the digital-work-lab
triplecolocalization
Program used to calculate the colocalization between three color channels during immunofluoresence micoscopy. Program will calculate the percentage of overlap of channel 1 to both channels 2 and 3 together. Output colocalization is based on Manders' Colocalization Coefficient
https://github.com/digital-work-lab/open-source-collaboration-game
https://github.com/digital-work-lab/thesis-template
Template for Bachelor's and Master's theses
hotsniper
An EDA toolchain for interval thermal simulations of 2D multi-/many-cores in an open system.
atomec
Mirror of the atoMEC repository. Please do not post issues or pull requests here. Use https://github.com/atomec-project/atoMEC instead.
https://github.com/crotwell/seisfile
A library for reading and writing seismic file formats in java.
llm_simpy
Research Compendium for exploring the ability of LLMs to generate SimPy models and streamlit interfaces.
https://github.com/digitalearthafrica/deafrica-sandbox-custom-ui
Custom UI for Sandbox authentication
https://github.com/arcadia-science/2024-organismal-selection
Code associated with the pub "Leveraging evolution to identify novel organismal models of human biology"
uniqc
Unified neuroimaging quality control (uniQC) toolbox. This repository holds the Matlab code, including development and releases, of the toolbox. The example and test data is elsewhere.
BlochSimulators
Julia package for performing Bloch simulations within the context of Magnetic Resonance Imaging
robustbench
RobustBench: a standardized adversarial robustness benchmark [NeurIPS 2021 Benchmarks and Datasets Track]
medical-analysis-assistant
a web appplication to assist with heart disease prediction, skin cancer and tubercolosis detection also with a health chatbot.
https://github.com/disi-unibo-nlp/uwb-nlos-human-detection
Dataset for "Human Being Detection from UWB NLOS Signals: Accuracy and Generality of Advanced Machine Learning Models"
https://github.com/disi-unibo-nlp/llm-cxr
Official code for "LLM-CXR: Instruction-Finetuned LLM for CXR Image Understanding and Generation"
https://github.com/disi-unibo-nlp/easumm
[DATA22 and Springer LNCS] Graph-Enhanced Biomedical Abstractive Summarization via Factual Evidence Extraction
https://github.com/disi-unibo-nlp/ddegk
Implementation of Deep Divergence Event Graph Kernels
https://github.com/disneyhogg/personal_webpage
My personal website, now hosted on GitHub
https://github.com/dissco/doi-nsc
Persistent identification of Digital Extended Specimens
https://github.com/disneyhogg/jnr_skyrmions
Julia code based upon Skyrmions3D to study JNR skyrmions
https://github.com/disneyhogg/wiman-translation
A translation from German to English of the work by Anders Wiman "Ueber die algebraischen Curven von den Geschlechtern p = 4, 5 und 6, welche eindeutige Transformationen in sich besitze", 1895.
https://github.com/disneyhogg/brings_curve
A repository holding code related to my paper with H. W. Braden on Bring's curve.
2025-04-07-kit
Workshop page for the Software Carpentry Workshop @ KIT - Spring 2025