GitHub
mesogeos
A multi-purpose dataset for data-driven wildfire modeling in the Mediterranean. Deep Learning models for wildfire modeling, e.g. danger forecasting, burned area prediction, etc
dlup
Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute
@stdlib/stats-base-dists-degenerate-pmf
Degenerate distribution probability mass function (PMF).
evergladeswadingbird
Data from the Everglades breeding bird monitoring project
LTRpred
LTRpred: de novo annotation of intact retrotransposons - Published in JOSS (2020)
PSP
PSP-UFU (Power Systems Platform of Federal University of Uberlândia) is a cross-platform, multilingual, Free and Open-Source Software with advanced GUI features and CAD tools for electrical power system studies.
@stdlib/stats-base-dists-chisquare-quantile
Chi-squared distribution quantile function.
https://github.com/bowang-lab/orthrus
Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifically designed for long-sequence data, such as RNA.
ebtorch
🤓🔥 Collection of PyTorch additions, extensions, utilities, uses and abuses
ClimSim
An open large-scale dataset for training high-resolution physics emulators in hybrid multi-scale climate simulators.
https://github.com/adrn/torusimaging
Implementation of Orbital Torus Imaging, and tools for pipelining runs.
https://github.com/cdcgov/covid_case_privacy_review
Privacy review and statistical disclosure control methods for covid public case data.
chocomufin
Tools for normalizing the use of some characters and checking file consistencies
hp3
Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975
https://github.com/brentp/bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://github.com/csinva/csinva.github.io
Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.
visualize_coauthor_network
Simple scripts I've used to visualize my coauthor network using google scholar over the years (i.e., for promotion and tenure packets)
gametheorynotes
Student's note on Game Theory, mainly from the Coursera "Game Theory" (Jackson, Leyton-Brown & Shoham) MOOC
nf-genomeresolvedmetagenomics
A nextflow pipeline to perform genome resolved metagenomics
kubernetes-introduction
Reproducible Computational Environments Using Containers: Introduction to Kubernetes
bf-defprit
Supplementary material for "Translating priors from linear mixed models to repeated-measures ANOVA and paired t-tests"
localpolynomialdensityestimation.jl
Estimate bivariate densities using nonparametric local polynomial procedures
pgm2022-sourceseparationnar
Experiments and code of the paper "Online Single-Microphone Source Separation using Non-Linear Autoregressive Models"
utk_collectionbuilder_workshop
This is a test collection for the CollectionBuilder workshop at UTK.
ammonia-prospective-scenarios
Future supply chains for ammonia, based on prospective scenarios.
shrinkcovmat
Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
webr
The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.
https://github.com/cytomining/deepprofiler
Morphological profiling using deep learning
https://github.com/aiidateam/acwf-verification-scripts
Scripts to run and perform data analysis on the AiiDA common workflows (ACWF) subproject on verification
@stdlib/stats-base-dists-chisquare-stdev
Chi-squared distribution standard deviation.
@stdlib/ndarray-base-bytes-per-element
Return the number of bytes per element provided an underlying array data type.
libhydrogen
A lightweight, secure, easy-to-use crypto library suitable for constrained environments.
pylcaio
A Python class to hybridize lifecycle assessment (LCA) and environmentally extended input-output (EEIO) databases.
outsider
outsider: Install and run programs, outside of R, inside of R - Published in JOSS (2020)
mpnum
mpnum: A matrix product representation library for Python - Published in JOSS (2017)
https://github.com/cedrickchee/awesome-ml-model-compression
Awesome machine learning model compression research papers, quantization, tools, and learning material.
rdefra
rdefra: Interact with the UK AIR Pollution Database from DEFRA - Published in JOSS (2016)
occupationcoder
Given a job title and job description, the algorithm assigns a standard occupational classification (SOC) code to the job.
@stdlib/stats-base-dists-beta-pdf
Beta distribution probability density function (PDF).
@stdlib/stats-base-dists-gamma-pdf
Gamma distribution probability density function (PDF).
tamga
A modern, high-performance logging utility for Python with multiple output formats and colorful console output.
OMEinsumContractionOrders
Tensor network contraction order optimizers (not only) for OMEinsum