GitHub
https://github.com/hwunrow/bayesian-cyclegan
[TNNLS] Bayesian Cycle-Consistent Generative Adversarial Networks via Marginalizing Latent Sampling
https://github.com/fertiglab/mkras-vax
scRNA and TCR analysis, including T-cell expansion assays, from subjects in J1994 manuscript by Huff et al.
https://github.com/hbclab/softwareissues
Issues when running primarily fmriprep/mriqc/xcpengine (primarily on argon)
https://github.com/fertiglab/pdac_atlas
Analysis workflow for all data present in our PDAC Atlas Manuscript titled, "Transfer learning associates CAFs with EMT and inflammation in tumor cells in human tumors and organoid co-culture in pancreatic ductal adenocarcinoma"
https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
https://github.com/jcallinan/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
https://github.com/hbclab/pysurfer
Cortical neuroimaging visualization in Python
https://github.com/hbclab/atlascorr
basic correlations of fMRI data using an atlas
https://github.com/hbclab/miykael.github.io
Repo for my personal page: https://miykael.github.io/
https://github.com/hbclab/eprimedockerfile
Dockerfile to create the environment to run the eprime conversion code in the task repositories
https://github.com/924973292/awesome-aerial-ground-object-re-identification
Awesome-AGReID is a curated collection of the latest methods, datasets, and benchmarks for Aerial–Ground Object Re-Identification (AG-ReID). This field focuses on matching objects, mainly people and vehicles, between aerial drone views and ground cameras—an important task for surveillance and security applications.
https://github.com/hbclab/networkneuroscience
Repository for scripts to run network analyses on neuroimaging data
https://github.com/hbeale/epinano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
https://github.com/jcbayley/vitamin_c
This will be the first official public release of the VItamin code base. VItamin is a python package for producing fast gravitational wave posterior samples.
https://github.com/jchiyah/exploring-mm-in-simmc2
Code and models for the paper 'Exploring Multi-Modal Representations for Ambiguity Detection & Coreference Resolution in the SIMMC 2.0 Challenge' published at AAAI 2022 DSTC10 Workshop
https://github.com/hbpmedical/mip-deployment
Deploy the Medical Informatics Platform
https://github.com/hbpmedical/mip_schema
Open-source Python package to manipulate Common Data Elements Metadata Schema for the Medical Informatics Platform (MIP).
https://github.com/jcj7292/mda-cnn
Paper https://www.sciencedirect.com/science/article/pii/S0045782521007015
https://github.com/jclutch/system-design-primer
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
https://github.com/jcmcnch/global-rrna-univeral-metabarcoding-of-plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
https://github.com/hbpmedical/heatmaply
Interactive Heat Maps for R Using plotly
https://github.com/jcmgray/abeliantensors
A library for Abelian symmetry preserving tensors in Python 3
https://github.com/jcmgray/opt_einsum_samples
Tensor network sample contractions in JSON format for testing opt_einsum.
https://github.com/hbrown18/e3sm
Energy Exascale Earth System Model source code.
https://github.com/hcdenbakker/seqsero
Salmonella serotyping from genome sequencing data
https://github.com/hcdenbakker/clonalframeml
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
ml4gw
Torch utilities for doing machine learning in gravitational wave physics
https://github.com/jcmgray/numpy
The fundamental package for scientific computing with Python.
https://github.com/jcmgray/proggyleg
Cumulative points and other progress plots for the premier league
https://github.com/jcmontesherrera/jcmontesherrera
Config files for my GitHub profile.
https://github.com/jcmontesherrera/coralline-algae-vis-spectra
The VIS-spectra of the Antarctic coralline algae T. antarcticum: Coupling hyperspectral imaging with standard pigment and DNA tools
https://github.com/hcdp/ascdp
American Samoa Climate Data Portal web application
https://github.com/jcmontesherrera/tern-dronescape
General protocols and checklists for drone imagery and point cloud collection used for TERN's Dronescape and Naturescan projects.
https://github.com/jcmontesherrera/jcmh-phd-thesis-notebooks
Notebooks and scripts created during the course of PhD research chapters.
https://github.com/hcdp/hcdp
HCDP application for dissemination and visualizing climate data for the state of Hawai
https://github.com/hcdp/loggernet_station_data
Station metadata and conversion tables
https://github.com/hcdp/mesonet_station_parser
Code for parsing mesonet loggernet files into Tapis stream
https://github.com/hcdp/preliminary_ignition_probability_predictions
Workflow for creating ignition probability future prediction maps
https://github.com/hcdp/hcdp_file_explorer
a simple file explorer for HCDP data
https://github.com/hcdp/batch_run_workflows
Scripts to batch run HCDP workflow processes
https://github.com/cinrc/a-beluga-formalization-of-ccskp
Artifact for the paper "A Formalization of the Reversible Concurrent Calculus CCSKP in Beluga"
https://github.com/hcdp/mesonet_flags_container
A container for creating mesonet flags
https://github.com/hcdp/mesonet-tapis-ui
Tapis UI customized for mesonet/station display of data
https://github.com/hcdp/demo-container
A simple demo container for the Nov 17 2023 containerization training.
https://github.com/hcdp/timeseries_gen
Create timeseries docs for virtual stations
https://github.com/hcdp/metadata_updater
Container and abaco setup for metadata updates using github webhooks
https://github.com/hci-lab-ugspeechdata/banga_audio_transcription_app
App for Banga audio and Transcription
https://github.com/allfed/pytradeshifts
Contains code and documentation for the pytradeshifts model
https://github.com/hci-lab-um/gleyed-ahead
Gleyed-ahead - swipe-typing for eye-based interaction with type ahead functionality
https://github.com/hcigroupkonstanz/re-locations
Re-locations: Augmenting Personal and Shared Workspaces to Support Remote Collaboration in Incongruent Spaces
https://github.com/hcigroupkonstanz/around-the-smartphone
ARound the Smartphone: Investigating the Effects of Virtually-Extended Display Size on Spatial Memory
https://github.com/hcmlab/nova
NOVA is a tool for annotating and analyzing behaviours in social interactions. It supports Annotators using Machine Learning already during the coding process. Further it features both, discrete labels and continuous scores and a visuzalization of streams recorded with the SSI Framework.
https://github.com/hcmlab/facemesheditor
An Editor to manually adjust automatic Face Mesh Detections