GitHub
MTEX2Gmsh
MTEX2Gmsh: a tool for generating 2D meshes from EBSD data - Published in JOSS (2020)
https://github.com/biolink/resource-ingest-guide-schema
A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
https://github.com/bioinfomachinelearning/multicom4
The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia
https://github.com/erictleung/talk-unittest-travis-ci
Presentation on Python's unittest and Travis CI
https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
dcgp
dcgp: Differentiable Cartesian Genetic Programming made easy. - Published in JOSS (2020)
https://github.com/baltic-coastal-monitoring-team/geopoint
GeoPOINT – Synthetic Point Generator for Geospatial Applications
https://github.com/erictleung/job-search-visualization
A data visualization of my job search in 2021
COVID-19 Data Hub
COVID-19 Data Hub - Published in JOSS (2020)
https://github.com/awesomecosmos/aayushi-verma-cv
Aayushi Verma's Curriculum Vitae.
https://github.com/auroradysis/kerrp2p
KerrP2P is a software designed for forward ray tracing in Kerr spacetime. It is specifically tailored to efficiently calculate multiple null geodesics between designated "source" and "observer" points, locate apparent positions of the corresponding images, and quantify their shapes.
FLAM
FLAM: Fast Linear Algebra in MATLAB - Algorithms for Hierarchical Matrices - Published in JOSS (2020)
https://github.com/astrazeneca/topmodel
Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.
https://github.com/assert-kth/vrepair
open science repo of "Neural Transfer Learning for Repairing Security Vulnerabilities in C Code" https://arxiv.org/pdf/2104.08308
https://github.com/chen-yang-liu/git-rsclip
Git-RSCLIP pre-trained on 10 million Remote sensing image-text pairs
https://github.com/chen-yang-liu/awesome-change-captioning
🔥Collection of resources and papers
https://github.com/arkokupski-wat/subjective_time_as_emergent_information_processing
The Brain's Clock: From the Phoenix Equation to Holographic Consciousness
https://github.com/arkokupski-wat/hypothesis-of-spontaneous-matter-antimatter-conversion
Hypothesis of Spontaneous Matter→Antimatter Conversion at Planck Densities
https://github.com/arkokupski-wat/g1g2-gravity-duality
🌌 G₁/G₂ Gravity Duality: Proves quantum & cosmic gravity are distinct phenomena.
https://github.com/arkokupski-wat/modified-spacetime-hypothesis
The hypothesis treats spacetime not as a passive backdrop for matter, but as an equal partner in physical transformations. The inspiration stems from explosive chemistry—specifically, how the detonation of high-energy materials mixtures) converts condensed matter into expanding gases and energy.
https://github.com/aria-systems-group/regret_synthesis_toolbox
Source code for Regret synthesis for two-player turn-based game played on graphs - ICRA 22
https://github.com/anon0411/decoh_as_codom
Feedback-guided quantum circuits exploring codomain-zero as a structural condition. 구조 형성의 조건으로서 공역 0을 실험하는 피드백 기반 양자 회로.
https://github.com/annahedstroem/sanity-checks-revisited
[NeurIPS XAIA & Springer] Code and notebooks to paper "A Fresh Look at Sanity Checks for Saliency Maps"
https://github.com/ambco-iscte/jask
A Library for Generating Questions about Learners' Code in Java
https://github.com/erictleung/how-to-learn-to-code
https://github.com/aloncrack7/data-degradation-detector
Library to make stimations on data degradation
https://github.com/aksw/frankgraphbench
The FranKGraphBench is a Framework to allow KG Aware RSs to be benchmarked in a reproducible and easy to implement manner. It was first created on Google Summer of Code 2023 for Data Integration between DBpedia and some standard RS datasets in a reproducible framework.
https://github.com/aiformedresearch/synthetic_images_metrics_toolkit
SIM Toolkit: 2D and 3D synthetic image quality assessment using quantitative and qualitative metrics.
https://github.com/ai4bharat/fbi
FBI: Finding Blindspots in LLM Evaluations with Interpretable Checklists
https://github.com/agroboticsresearch/headland_trajectory_planning
This repo is includes headland space modeling and trajectory planning for autonomous agricultural vehicle in the orchard.
https://github.com/agda/agda2lambox
Compiling Agda's internal syntax to λ-box terms.
https://github.com/adicksonlab/agdiff
Implementation of AGDIFF: Attention-Enhanced Diffusion for Molecular Geometry Prediction
https://github.com/adaptivemotorcontrollab/cellseg3d
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
https://github.com/abhishektiwari/scholarimpact
ScholarImpact: A bibliometric tool to analyse, visualise, and share your research impact, output and scholarly influence using Google Scholar and OpenAlex data.
https://github.com/robelgium/msnoise
A Python Package for Monitoring Seismic Velocity Changes using Ambient Seismic Noise | http://www.msnoise.org
https://github.com/erictleung/emacs-lisp-deliberate-practice
Deliberate Practice for Learning Emacs Lisp
https://github.com/kmnhan/erlabpy
Complete python workflow for Angle-Resolved Photoemission Spectroscopy (ARPES)
https://github.com/openchemistry/tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
https://github.com/patrickzib/dictionary
WEASEL 2.0 - A Random Dilated Dictionary Transform for Fast, Accurate and Constrained Memory Time Series Classification
https://github.com/ajshajib/dolphin
Automated pipeline for lens modelling based on lenstronomy
https://github.com/desbordante/desbordante-core
Desbordante is a high-performance data profiler that is capable of discovering many different patterns in data using various algorithms. It also allows to run data cleaning scenarios using these algorithms. Desbordante has a console version and an easy-to-use web application.
https://github.com/erictleung/tidytuesdays
:chart_with_upwards_trend: My attempts at #tidytuesday
https://github.com/ibridges-for-irods/ibridges
A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers.
https://github.com/georgedouzas/imbalanced-learn-extra
Implementation of novel oversampling algorithms.
magicbathynet
Quick start guide for benchmarking MagicBathyNet dataset in learning-based bathymetry and pixel-based classification using Remote Sensing imagery.
IDEAS
Modelica library allowing simultaneous transient simulation of thermal and electrical systems at both building and feeder level.
https://github.com/computecanada/magic_castle
Terraform modules to replicate the HPC user experience in the cloud
worldcereal-classification
This repository contains the classification module of the WorldCereal system.
https://github.com/computationalpsychiatry/physio-examples
Example Data Repository for the TAPAS PhysIO Toolbox. Offers different vendors file formats and corresponding example scripts for the toolbox.
rca
The Code for the runtime tests for the Paper "Rescue Craft Allocation in Tidal Waters of the North and Baltic Sea"
firedpy
A Python Command Line Interface for classifying fire events from the Collection 6 MODIS Burned Area Product.
pybeach
pybeach: A Python package for extracting the location of dune toes on beach profile transects - Published in JOSS (2019)
tcrm
A statistical-parametric model for assessing wind hazard from tropical cyclones
access-om2
Deprecated ACCESS-OM2 global ocean - sea ice coupled model code and configurations.
spatpomp
R package for statistical inference of spatiotemporal partially observed Markov processes
