GitHub
openseadragon
An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.
awesome-avd
A curated list of research resources in automated vulnerability detection (AVD)
Containershare
Containershare: Open Source Registry to build, test, deploy with CircleCI - Published in JOSS (2018)
openconcept
OpenConcept: A toolkit for conceptual MDAO of aircraft with unconventional propulsion architectures
inference
Turn any computer or edge device into a command center for your computer vision projects.
personaverse
Team StochasticallyYours | Natural Language Processing Project | 2025
subprecisioncontactdetection.jl
A Julia package to detect contacts below the precision of a superresolution microscope between 2 subcellular organelles in 2-channel superresolution (STED) microscopy.
pl_curves
Python script for drawing Pareto–Lorenz curves for bacterial abundance data.
stars-simpy-example-docs
STARS Project: Example `simpy` model documentation using JupyterBook, GitHub Pages, and STRESS
vetting
Simple, stand-alone tools for vetting transit signals in Kepler, K2 and TESS data
3286b92f-4fae-4cc6-a29e-e408bc844542
Learning the Underlying Physics of a Simulation Model of the Ocean's Temperature
preciseTAD
preciseTAD: A machine learning framework for precise 3D boundary prediction at base-level resolution
scikit-surgerynditracker
Easy communication with NDI trackers (Polaris Vicra, Spectra, Vega, and Aurora)
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
dimensio
Multivariate Data Analysis - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/dimensio
wrf-python
A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model.
https://github.com/astropy/sphinx-automodapi
Sphinx extension for generating API documentation
cntext
text analysis, supporting multiple methods including word count, readability, document similarity, sentiment analysis, Word2Vec/GloVe, and Large Language Models (LLMs).文本分析包，支持字数统计、可读性、文档相似度、情感分析在内的多种文本分析方法。
asreview-insights
Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB
solarmach
Python package of the multi-spacecraft longitudinal configuration plotter Solar-MACH
QuantumOptics
Library for the numerical simulation of closed as well as open quantum systems.
mantra
Home of the "MountAiN glacier Transient snowline Retrieval Algorithm", a Google Earth Engine tool to measure the average altitude of the snow-ice boundary for very many glaciers.
stars-carla-experiments
This repository analyzes driving data recorded with the Carla Simulator using the STARS framework.
gpt-researcher
LLM based autonomous agent that conducts deep local and web research on any topic and generates a long report with citations.
butter2d
Butterworth filter for spatial frequencies on images. Includes a WASM demo
scikit-surgerycore
SciKit-SurgeryCore implements algorithms and tools that are common to all SciKit-Surgery packages
cashocs
computational adjoint-based shape optimization and optimal control software for python
awesome-neural-cellular-automata
A list of paper and resources regarding Neural Cellular Automata
rdesrap_mms
Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing an M/M/s queueing model.
dbcanlight
A lightweight rewrite of run_dbcan for better multithread performance
dynesty
Dynamic Nested Sampling package for computing Bayesian posteriors and evidences
efp-seq_browser
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
BioStructures
A Julia package to read, write and manipulate macromolecular structures
pygfunction
An open-source toolbox for the evaluation of thermal response factors (g-functions) of geothermal borehole fields.
embomicrocom2
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024
tiny_qa_benchmark_pp
Tiny QA Benchmark++ a micro-benchmark suite (52-item gold + on-demand multilingual synthetic packs), generator CLI, and CI-ready eval harness for ultra-fast LLM smoke-testing & regression-catching.
luigi
Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
lightgbm
A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
bcdi
BCDI: tools for pre(post)-processing Bragg coherent X-ray diffraction imaging data
rabies
fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
batchtools
batchtools: Tools for R to work on batch systems - Published in JOSS (2017)
iree-base-compiler
A retargetable MLIR-based machine learning compiler and runtime toolkit.
reaction-network
Reaction Network is a Python package for predicting likely inorganic chemical reaction pathways using graph theoretical methods. Project led by @mattmcdermott (formerly at Berkeley Lab).
https://github.com/bytedance/protenix
A trainable PyTorch reproduction of AlphaFold 3.
sqsgenerator
A command line tool written in Python/C++ for finding optimized SQS structures
haskell-language-server
Official haskell ide support via language server (LSP). Successor of ghcide & haskell-ide-engine.
tesselle
Easily Install and Load tesselle Packages - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/tesselle
https://github.com/astropy/extension-helpers
Helpers to assist with building Python packages with compiled C/Cython extensions
casadi
CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.