GitHub
aiproteomics
A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models.
doi-exercise
Repository to train making a GitHub repository public following these instruction: https://coderefinery.github.io/github-without-command-line/doi/ which are part of this repository by coderefinery: https://github.com/coderefinery/github-without-command-line
tiledmultigpuvisualization
Using tiled display systems for the interactive visualization of GPGPU computed data
ed-lgt
Code for Exact Diagonalization of Quantum Many-Body Hamiltonians and Lattice (Abelian and Non-Abelian) Gauge Theories in D=1,2,3 spatial dimensions
integrate-indicator-software
Scripts to explore the streamlining and integration of software (with focus on R packages) related to the calculation of indicators based on biodiversity data cubes
ar7-wg1-fod-ch99-fig99-python
example, base on ar6 chapter3 figure11, https://github.com/IPCC-WG1/Chapter-3_Fig11
volume-cartographer
Volumetric processing toolkit and C++ libraries for the recovery and restoration of damaged cultural materials
https://github.com/inutano/rsem
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
fluidimage
:sparkler: A libre Python framework for scientific treatments of large series of images (publish-only mirror)
glamod-marine-processing
Code and configuration for GLAMOD marine data processing
lc-containers_vms
Library Carpentry Containers and Virtual Machines for Librarians
notch-delta-coupling
Source code for "Coupling dynamics of 2D Notch-Delta signalling", by Francisco Berkemeier and Karen M. Page
faser-2-mphys-project-acts
My edits to the ACTS simulation software for simulating background radiation in the FASER-2 detector.
https://github.com/ivis-at-bilkent/cytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
mech-m-dual-1-dbm
Course material for a ~3 * 15 hours (5 ECTS) course on basic concepts for data science. All the topics are presented with the Python implementation included. We cover matrix decompositions, regression, signal processing, sparsity and compressed sensing and a bit of statistics.
9
Compare the results from eQuilibrator (component contribution) or group contribution methods with experimental results from nucleoside phosphorolysis
access-om2
Deprecated ACCESS-OM2 global ocean - sea ice coupled model code and configurations.
mmap-access-pattern-openmp
Design a fast parallel memory access pattern for a memory-mapped file with mmap().
https://github.com/openchemistry/tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
https://github.com/kmnhan/erlabpy
Complete python workflow for Angle-Resolved Photoemission Spectroscopy (ARPES)
number-uint32-base-muldw
Compute the double word product of two unsigned 32-bit integers.
https://github.com/robelgium/msnoise
A Python Package for Monitoring Seismic Velocity Changes using Ambient Seismic Noise | http://www.msnoise.org
https://github.com/abhishektiwari/scholarimpact
ScholarImpact: A bibliometric tool to analyse, visualise, and share your research impact, output and scholarly influence using Google Scholar and OpenAlex data.
louvain-lowmem-communities-openmp
Design of memory-efficient OpenMP-based Parallel Louvain algorithm for community detection.
stats-strided-snanrange
Calculate the range of a single-precision floating-point strided array, ignoring NaN values.
deltabreed
Open source data management software for specialty crop and animal breeders.
https://github.com/adaptivemotorcontrollab/cellseg3d
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
https://github.com/adicksonlab/agdiff
Implementation of AGDIFF: Attention-Enhanced Diffusion for Molecular Geometry Prediction
r-lib-actions
GitHub Actions for the R community. Secure drop-in replacement for r-lib/actions.
https://github.com/agda/agda2lambox
Compiling Agda's internal syntax to λ-box terms.
https://github.com/agroboticsresearch/headland_trajectory_planning
This repo is includes headland space modeling and trajectory planning for autonomous agricultural vehicle in the orchard.
math-base-special-minabsf
Return the minimum absolute single-precision floating-point number.
https://github.com/ai4bharat/fbi
FBI: Finding Blindspots in LLM Evaluations with Interpretable Checklists
https://github.com/aiformedresearch/synthetic_images_metrics_toolkit
SIM Toolkit: 2D and 3D synthetic image quality assessment using quantitative and qualitative metrics.
fasta-rbca-resolver
Fasta Automated Rule-Based Country Assignment (RBCA) for influenza
https://github.com/aksw/frankgraphbench
The FranKGraphBench is a Framework to allow KG Aware RSs to be benchmarked in a reproducible and easy to implement manner. It was first created on Google Summer of Code 2023 for Data Integration between DBpedia and some standard RS datasets in a reproducible framework.
fastapi-postgres
Template for building FastAPI Asynchronous applications with PostgreSQL(SQLModel)
physicell
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
quarto-modal
A Quarto extension providing a simple way to create Bootstrap modals in your HTML documents.
spatpomp
R package for statistical inference of spatiotemporal partially observed Markov processes
https://github.com/aloncrack7/data-degradation-detector
Library to make stimations on data degradation
zensvi
This package is a one-stop solution for downloading, cleaning, analyzing street view imagery
https://github.com/ambco-iscte/jask
A Library for Generating Questions about Learners' Code in Java
collectress
Collectress (/kəˈlɛktɹɪs/) is a Python tool designed for downloading web data feeds periodically and consistently.
https://github.com/annahedstroem/sanity-checks-revisited
[NeurIPS XAIA & Springer] Code and notebooks to paper "A Fresh Look at Sanity Checks for Saliency Maps"
https://github.com/anon0411/decoh_as_codom
Feedback-guided quantum circuits exploring codomain-zero as a structural condition. 구조 형성의 조건으로서 공역 0을 실험하는 피드백 기반 양자 회로.
https://github.com/aria-systems-group/regret_synthesis_toolbox
Source code for Regret synthesis for two-player turn-based game played on graphs - ICRA 22
pipelines
Custom JWST reduction pipelines for NIRSpec and MIRI Solar System observations