chronos-forecasting • Rank 20.5 • Science 54%

Chronos: Pretrained Models for Probabilistic Time Series Forecasting

stochasticad.jl • Rank 7.5 • Science 67%

Research package for automatic differentiation of programs containing discrete randomness.

imas2xarray • Rank 7.5 • Science 67%

Imas2xarray is a python library for reading and writing IMAS data in hdf5 format using xarray

ukboards • Rank 7.5 • Science 67%

smartwatts • Rank 10.5 • Science 64%

SmartWatts is a formula for a self-adaptive software-defined power meter based on the PowerAPI framework.

bacass • Rank 7.5 • Science 67%

Simple bacterial assembly and annotation pipeline

mmagic • Rank 20.5 • Science 54%

OpenMMLab Multimodal Advanced, Generative, and Intelligent Creation Toolbox. Unlock the magic 🪄: Generative-AI (AIGC), easy-to-use APIs, awsome model zoo, diffusion models, for text-to-image generation, image/video restoration/enhancement, etc.

global-indicators • Rank 7.5 • Science 67%

An open-source tool for calculating and reporting spatial indicators for healthy, sustainable cities worldwide using open or custom data.

lfpy • Rank 15.5 • Science 59%

Python-module for calculation of extracellular potentials from multicompartment neuron models and networks

ghs • Rank 7.5 • Science 67%

GitHub Search: Platform used to crawl, store and present projects from GitHub, as well as any statistics related to them

advtok • Rank 7.5 • Science 67%

Adversarial Tokenization

neuromaps • Rank 15.5 • Science 59%

A toolbox for comparing brain maps

galois • Rank 20.5 • Science 54%

A performant NumPy extension for Galois fields and their applications

dataretrieval-python • Rank 17.5 • Science 57%

Python package for retrieving water data from USGS or the multi-agency Water Quality Portal

scikit-matter • Rank 7.5 • Science 67%

A collection of scikit-learn compatible utilities that implement methods born out of the materials science and chemistry communities

suitesparse • Rank 15.5 • Science 59%

The official SuiteSparse library: a suite of sparse matrix algorithms authored or co-authored by Tim Davis, Texas A&M University.

Interpolations • Rank 20.5 • Science 54%

Fast, continuous interpolation of discrete datasets in Julia

syngular • Rank 7.5 • Science 67%

A Python Interface & Extension to Singular

old_cresis-toolbox • Rank 7.5 • Science 67%

CReSIS Toolbox: Polar radar software toolbox (mostly Matlab based). Includes OPS interface.

NeuroDiffEq — Peer-reviewed • Rank 15.5 • Science 59%

NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)

acttensor-tf • Rank 7.4 • Science 67%

ActTensor: Activation Functions for TensorFlow. https://pypi.org/project/ActTensor-tf/ Authors: Pouya Ardehkhani, Pegah Ardehkhani

TurbulenceConvection.jl • Rank 7.4 • Science 67%

A turbulence-convection single column model cloud parameterization.

abg-python • Rank 10.4 • Science 64%

common python utilities

airrflow • Rank 7.4 • Science 67%

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

brglm2 • Rank 15.4 • Science 59%

Estimation and inference from generalized linear models using explicit and implicit methods for bias reduction

quantumtoolbox.jl • Rank 7.4 • Science 67%

Quantum Toolbox in Julia

navis • Rank 15.4 • Science 59%

Python library for analysis of neuroanatomical data.

lauenn • Rank 7.4 • Science 67%

LaueNN- neural network training and prediction routine to index single and polycrystalline Laue diffraction patterns

funcscan • Rank 7.4 • Science 67%

(Meta-)genome screening for functional and natural product gene sequences

CUTEst • Rank 10.4 • Science 64%

Julia's CUTEst Interface

demultiplex • Rank 7.4 • Science 67%

Demultiplexing pipeline for sequencing data

https://github.com/arogozhnikov/hep_ml • Rank 15.4 • Science 59%

Machine Learning for High Energy Physics.

pyirf • Rank 15.4 • Science 59%

Python IRF builder

mosec • Rank 20.4 • Science 54%

A high-performance ML model serving framework, offers dynamic batching and CPU/GPU pipelines to fully exploit your compute machine

springtime • Rank 7.4 • Science 67%

Spatiotemporal phenology research with interpretable models

waporcodes • Rank 7.4 • Science 67%

Jupyter notebooks on WaPOR based monitoring of water productivity and irrigation performance indicator

FuzzyLogic • Rank 7.4 • Science 67%

Julia package for fuzzy inference

graasp-cli • Rank 7.4 • Science 67%

A CLI to create apps and labs for the Graasp ecosystem.

pytorch_optimizer • Rank 20.4 • Science 54%

optimizer & lr scheduler & loss function collections in PyTorch

dssdata • Rank 7.4 • Science 67%

⚡A python micro-framework for simulation and data analysis of electrical distribution systems modeled on OpenDSS.

TDLM — Peer-reviewed • Rank 7.4 • Science 67%

TDLM: An R package for a systematic comparison of trip distribution laws and models - Published in JOSS (2023)

powerdynamics.jl • Rank 10.3 • Science 64%

Package for dynamical modeling of power grids

biobb-vs • Rank 7.3 • Science 67%

Biobb_vs is the Biobb module collection to perform virtual screening studies.

openff-bespokefit • Rank 7.3 • Science 67%

Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.

frc • Rank 7.3 • Science 67%

frc is a Python package for computing the Fourier Ring Correlation (FRC) of images using DIPlib

openml • Rank 20.3 • Science 54%

OpenML's Python API for a World of Data and More 💫

rnaflow • Rank 7.3 • Science 67%

A simple RNA-Seq differential gene expression pipeline using Nextflow

eomaps • Rank 15.3 • Science 59%

A library to create interactive maps of geographical datasets

geofileops • Rank 7.3 • Science 67%

Python toolbox to process large geospatial vector files faster.

https://github.com/materialsvirtuallab/m3gnet • Rank 15.3 • Science 59%

Materials graph network with 3-body interactions featuring a DFT surrogate crystal relaxer and a state-of-the-art property predictor.

RestrictedBoltzmannMachines • Rank 7.3 • Science 67%

Train and sample Restricted Boltzmann machines in Julia

PROPACK • Rank 7.3 • Science 67%

Julia wrapper of the PROPACK sparse SVD library

pyvolutionary • Rank 7.3 • Science 67%

This repository contains pyVolutionary, a package collecting metaheuristic algorithms

cppcheatsheet • Rank 7.3 • Science 67%

C/C++ Cheat Sheet

deepfri • Rank 7.3 • Science 67%

Deep functional residue identification

MultiScaleTreeGraph • Rank 7.3 • Science 67%

Read, analyse, compute, write and convert MTG files

pca • Rank 20.3 • Science 54%

pca: A Python Package for Principal Component Analysis.

EvaluateCore • Rank 7.3 • Science 67%

Quality Evaluation of Core Collections

MomentClosure • Rank 7.3 • Science 67%

Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

baseband • Rank 15.2 • Science 59%

Package to read and write radio baseband data

biomero • Rank 10.2 • Science 64%

BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

shxarray • Rank 7.2 • Science 67%

Extension to xarray providing functionality to work with spherical harmonic datasets

rtoot • Rank 17.2 • Science 57%

:mammoth: R package to interact with the mastodon API

hlatyping • Rank 7.2 • Science 67%

Precision HLA typing from next-generation sequencing data

NormalyzerDE • Rank 15.2 • Science 59%

Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.

autokoopman • Rank 10.2 • Science 64%

AutoKoopman - automated Koopman operator methods for data-driven dynamical systems analysis and control.

studio • Rank 7.2 • Science 67%

Audiobook alignment for Indigenous languages

harmony • Rank 7.2 • Science 67%

The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.

alphatims • Rank 15.2 • Science 59%

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

pcmpy • Rank 7.2 • Science 67%

PCM toolbox - implementation in Python

autono • Rank 7.2 • Science 67%

A ReAct-Based Highly Robust Autonomous Agent Framework.

hBayesDM • Rank 15.2 • Science 59%

Hierarchical Bayesian modeling of RLDM tasks, using R & Python

meltpt • Rank 7.2 • Science 67%

Calculate pressures and temperatures of melting for basaltic rocks and fit with melting models.

thematos • Rank 7.2 • Science 67%

A HyFI plugin for Topic Modeling

Pymagicc — Peer-reviewed • Rank 15.2 • Science 59%

Pymagicc: A Python wrapper for the simple climate model MAGICC - Published in JOSS (2018)

hyperelastic • Rank 7.2 • Science 67%

Constitutive hyperelastic material formulations for FElupe.

hgdl • Rank 10.2 • Science 64%

API for Distributed HPC Function Optimization

genome-spy • Rank 7.2 • Science 67%

A visualization grammar and GPU-accelerated toolkit for genomic data

pybasic-illumination-correction • Rank 7.2 • Science 67%

Python implementation of the BaSiC shading correction method

nascent • Rank 7.2 • Science 67%

Nascent Transcription Processing Pipeline

geodist • Rank 17.1 • Science 57%

Ultra lightweight, ultra fast calculation of geo distances

pylabnet • Rank 10.1 • Science 64%

Client-server, python-based laboratory software

ml-hierarchical-confusion-matrix • Rank 7.1 • Science 67%

Neo: Hierarchical Confusion Matrix Visualization (CHI 2022)

random-survival-forest • Rank 10.1 • Science 64%

A Random Survival Forest implementation for python inspired by Ishwaran et al. - Easily understandable, adaptable and extendable.

dataverse • Rank 17.1 • Science 57%

R Client for Dataverse Repositories

fr.inria.gforge.spirals • Rank 7.1 • Science 67%

Open-science code of the program repair tool described in "Dynamic Patch Generation for Null Pointer Exceptions Using Metaprogramming" (SANER'17)

https://github.com/tilde-lab/quantum_esperanto • Rank 7.1 • Science 67%

Very fast parser for the XML logs produced with the VASP, Vienna Ab initio Simulation Package

https://github.com/charlesll/rampy • Rank 15.1 • Science 59%

Python software for spectral data processing (IR, Raman, XAS...)

kshell-utilities • Rank 10.1 • Science 64%

Handy utilities for processing nuclear shell model data from KSHELL

pymusas • Rank 12.1 • Science 62%

Python Multilingual Ucrel Semantic Analysis System

project-pareto • Rank 7.1 • Science 67%

An Optimization Framework for Produced Water Management and Beneficial Reuse

epitopeprediction • Rank 7.1 • Science 67%

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

timetracker-csv • Rank 7.1 • Science 67%

Pandas-friendly time tracking from the command line, repo by repo

unet • Rank 15.1 • Science 59%

"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.

beditor • Rank 7.1 • Science 67%

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

ppdyn • Rank 7.1 • Science 67%

Plasma Particle Dynamics (PPDyn), a python code to simulate plasma particles using Molecular Dynamics Algorithm. Numba JIT compiler for Python has been implemented for faster performance. Detailed documentation can be found at https://ppdyn.readthedocs.io/.

ClosedLoopReachability • Rank 7.1 • Science 67%

Reachability analysis for closed-loop control systems in Julia

spiffworkflow • Rank 20.1 • Science 54%

A powerful workflow engine implemented in pure Python

thermofluidstream • Rank 7.1 • Science 67%

The DLR Thermofluid Stream Library

honestcybereval • Rank 2.1 • Science 72%

An honest eval of the cyber risk of AI using a real cyber task (vs proxy tasks).