GitHub
qdarts
Efficient Simulation of Charge Transitions in Quantum Dot Arrays with Sensor Dots, Tunnel Couplings, and Variable Charging Energy
jupyter
Jupyter notebooks - A tool to write and share executable notebooks and data visualization
rbvfit
A Bayesian Voigt profile fitter. Optimized for absorption line analysis.
https://github.com/dimits-ts/visualization-team-project
Team project visualizing various views for an established bike-sharing company. Includes a written report, presentation, R-code and Tableau files
scrnaseq-cellcomm-pipeline
Pipeline for inferring cell-cell interactions from scRNAseq data using multiple publicly available tools.
abmanimalmovement
The abmAnimalMovement simulates animal movement use a discrete time agent-based model, programmed in C++ via the Rcpp package. The simulations include a number of key internal and external movement influences, as well as parameters for navigation and mobility capacity of the animal.
climkern
Python package for easily computing climate feedbacks using radiative kernels.
multispectral-potato-plants-images
A Dataset of Multispectral Potato Plants Images
cogload_beforeJATOS
This repository contains the code of the experience that will test the effect of an n-back task on different cognitive processes. The N-back task is based on the work of Teodora Vékony and Bastien Blain.
grogupy
Python package calculating relativistic magnetic interactions for the generalised Heisenberg model.
https://github.com/dimits-ts/large-text-nlp-survey
A survey paper exploring the use of state-of-the-art deep neural network architectures in NLP problems featuring very large documents.
d18o-ivc-sw
Compute oxygen-isotope chronologies for seawater from forams in sediment cores: ice-volume and temperature corrected
linklittogbifid
A script to link publications citing GBIF downloads to specimens
efda_movementsignalalignment
A user-friendly Matlab code wrapping and demonstrating some of "fdasrvf" functions for elastic alignment of movement signals.
ssfg
Spatial-Spectral Feature Guidance Network for Fine-Grained Object Detection and Recognition on Complex-Valued SAR Images
swift-homomorphic-encryption
Homomorphic Encryption library and applications in Swift
psych_fucntion
Software for psychometric function measurement and data analysis
pymantra
Metabolic Reaction Analysis and Multi-Omics Associations from Untargeted Metabolomics
thalamocortical
GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005
omicsgenetraitassociation
A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
gempy
GemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to address parameter and model uncertainties.
3d_printed_spacers
This Repository contains designs for 3D printed spacers for the cube extentions
eval_phenoflex
A bundle of evaluation functions I use when working with phenoflex
2025-10-21-cldt-part1-online
Collaborative Lesson Development Training Part 1: 21-24 October 2025
orthology_map
orthology_map is a pipeline designed to integrate suite of orthology assignment tools to contribute in a consensus based scoring algorithm
cramming
Cramming the training of a (BERT-type) language model into limited compute.
ai_requirements_generation_rr
This repository accompanies the paper “A Case Study on Cyber‑Security Requirement Elicitation: Leveraging Large‑Language‑Model Capabilities.” It contains every script, dataset, prompt template and result needed to fully reproduce our empirical study.
machine-learning-novice-sklearn
A Carpentry style lesson on machine learning with Python and scikit-learn.
partimode
Modeling Particle Movement and Destruction in the sediment surface mixed layer.
wurzburg-glosses-extraction
Extracts lemmata, forms and loci from the Würzburg glosses
guides-ads-marinesurvey
Source files for the ADS Guide to Good Practice on Marine Survey
fasttomo
Master's thesis project consisting in the development of a pipeline to segment and render tomography data of lithium-ion batteries during abuse testing.
icesee
A state-of-the-art data assimilation software package for coupling ice sheet models.
discontinuouslcs
Data, Python scripts and Results used in the publication entitled "Data-Error Scaling in Machine Learning on Natural Discrete Combinatorial Mutation-prone Sets: Case Studies on Peptides and Small Molecules"
scflvdj
scflvdj is a bioinformatics pipeline to analyze single cell TCR and BCR data.
nomad
Code for Nonlinear Manifold Alignment with Dynamics (NoMAD) detailed in Karpowicz et al., in press
https://github.com/dineshpinto/awesome-tee-blockchain
A curated list of resources for learning about Trusted Execution Environments (TEEs) in the context of blockchains.
opentronshttpapiwrapper
repository for extending the Opentrons HTTP API for more straightforward execution
realsense-align
Porting librealsense C++ align code to Python C++ extension. Align depth and color image from numpy array without librealsense SDK and rs:frame infrastructure.
mfacobpm
The contents of this repository describe the outline for a course on basic project management. There are three document sets each described in the README.
entrainment
☀️ Rule-Based Model of the 24h Light/Dark Cycle Entrainment Phenomenon
https://github.com/dineshpinto/gossip-protocol-rs
Simulating a gossip protocol with Byzantine nodes in Rust with PyO3 Python bindings
VoronoiGraph
Voronoi diagrams in N dimensions using an improved raycasting method.
org.cicirello:interactive-bin-packing
Self-guided tutorial on combinatorial optimization, the bin packing problem, and constructive heuristics, suitable for use as course assignments, or by self-directed learners.
mafmine_mas
A web-based decision-support tool for mining engineers to evaluate and select underground access and ore transport systems (shaft, ramp & trucks, inclined belt conveyor). Built with Vue.js, Vuex, and Vue Router, the app uses three methodologies—Cardozo (2023), La Vergne (2003), and Moser (1996)—to guide early-phase decision-making.