GitHub
ms2deepscore
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
r
Repositório dos meus scripts, incluindo trabalhos acadêmicos e estudos sobre R no RStudio e suas funcionalidades.
charlie
Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs
complex-float32-base-assert-is-almost-equal
Test whether two single-precision complex floating-point numbers are approximately equal within a specified number of ULPs (units in the last place).
EQDSKReader
Code to read and manipulate EQDSK files, describing plasma equilibirium model
stitchimpute
Pipeline that uses STITCH for imputing genotypes from low-coverage NGS data in a population.
irfu-matlab
Matlab routines to work with space data, particularly with MMS and Cluster/CAA data. Also some general plasma routines.
mbi
A library providing general-purpose tools for estimating discrete distributions from noisy observations of their marginals.
cyberaibenchmark
CyberAIBenchmark is a Python-based benchmarking tool designed to evaluate AI models by scraping content from specified web pages and sending it to language models for processing.
robopal
robopal: a multi-platform, modular robot simulation framework based on MuJoCo, mainly used for reinforcement learning and control algorithm implementation of robotic arms.
treeoflife-toolbox
Source-specific tools for processing data (images) downloaded using distributed downloader and relies on MPI.
invariants_py
Calculate invariant trajectory representations from trajectory data and generate new trajectories from the invariants.
katmer
katmer is a powerful library for optimizing the design of optical thin films using automatic differentiation via JAX and Equinox, enabling efficient and accurate inverse design solutions.
system-hardware-id-generator
The System Hardware ID Generator Script is a Python tool designed to generate a unique Hardware ID (HWID) for the device it runs on. The HWID is represented as an 18-digit integer, making it efficient for storage in databases and indexing. This script can be used for software licensing, device authentication, and hardware inventory management.
viral-experiment-lip-analysis
Viral Experiment Limited Proteolysis (LiP) Analysis Workflow
complex-float64-base-assert-is-almost-equal
Test whether two double-precision complex floating-point numbers are approximately equal within a specified number of ULPs (units in the last place).
hmm_cpp
Complete C++ implementation of Hidden Markov Models with modern C++17 and Eigen
geolantis
Set of notebooks and landlab tutorials to get students started on the interactive Geolantis project.
reduced-wannier-representation
📜 Repo for the paper "Reduced Wannier Representation for Topological Bands" (PhysRevB.111.205139)
hferp-cryptanalysis
The code associated with HFERP Cryptanalysis Divide and Conquer and Support Minors attacks
whisperxtranscription4researchers
This repository contains a Jupyter notebook for qualitative researchers to transcribe, diarize speakers, and convert audio or video files into various text formats (csv, txt, json, & vtt).
duracketal25-forcingworkshopsummary
A meeting report, summarizing key takeaways from the October 2025 workshop "Pathway to regular and sustained delivery of climate forcing datasets"
notiflyer
an inspiring and refreshing new way of sending KPIs, alerts, or simple tabular data as emails
django2pydantic
Django2pydantic is the most complete library for converting Django ORM models to Pydantic models
robincar
ROBust INference for Covariate Adjustment in Randomized clinical trials
potjansdiesmann2014
Large scale model of cortical network from Potjans and Diesmann, 2014
hpc-springschool
Git training during HPC spring school using MSc code for plotting statistical data
likelihoodbasedprofilewiseanalysis.jl
Julia package which implements and explores the Likelihood-based Profile Wise Analysis workflow for uncertainty quantification
a-classical-proof-of-the-riemann-hypothesis-via-self-adjoint-spectral-theory
Formal repository for “A Classical Proof of the Riemann Hypothesis via Self-Adjoint Spectral Theory” by Lawrence Ip. Contains manuscript and philosophical context via the Spectral Unity Theorem.
sars-cov-2-mpro-drug-discovery
A complete virtual screening + QSAR modeling + ADME profiling project
security-datasets-for-testing
A set of security datasets for testing of tools and algorithms
euromix-to-sbml
Antimony/SBML re-implementation of the EuroMix Generic PBK model.
nfdi4ingscientificworkflowrequirements
This is a repository to discuss, collect and store the requirements for scientific workflow systems
https://github.com/barahona-research-group/mcf
Code for the paper "Analysing Multiscale Clusterings with Persistent Homology" by Juni Schindler and Mauricio Barahona.
awesome-story-generation
This repository collects an extensive list of awesome papers about Story Generation / Storytelling, exclusively focusing on the era of Large Language Models (LLMs).
psmi
An implementation of Pointwise Sliced Mutual Information (PSMI) for machine learning
nedextract
Extract information on persons and organisation from Dutch PDF files
wolfsoftware.list-availability-zones
A python script for list all of the regions and their availability zones in AWS and your opt-in status.
innuce-spikify
Convert your data into spike-based signals for efficient and biologically-inspired spiking neural network applications, enabling faster and more energy-efficient computations.
variable-g-hypothesis
Phenomenological variable‑G model (logistic) for Li‑7, H₀ and σ₈ tensions
