GitHub
ClimSim
An open large-scale dataset for training high-resolution physics emulators in hybrid multi-scale climate simulators.
https://github.com/adrn/torusimaging
Implementation of Orbital Torus Imaging, and tools for pipelining runs.
https://github.com/cdcgov/covid_case_privacy_review
Privacy review and statistical disclosure control methods for covid public case data.
chocomufin
Tools for normalizing the use of some characters and checking file consistencies
hp3
Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975
https://github.com/brentp/bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://github.com/csinva/csinva.github.io
Slides, paper notes, class notes, blog posts, and research on ML 📉, statistics 📊, and AI 🤖.
ammonia-prospective-scenarios
Future supply chains for ammonia, based on prospective scenarios.
visualize_coauthor_network
Simple scripts I've used to visualize my coauthor network using google scholar over the years (i.e., for promotion and tenure packets)
localpolynomialdensityestimation.jl
Estimate bivariate densities using nonparametric local polynomial procedures
gametheorynotes
Student's note on Game Theory, mainly from the Coursera "Game Theory" (Jackson, Leyton-Brown & Shoham) MOOC
bf-defprit
Supplementary material for "Translating priors from linear mixed models to repeated-measures ANOVA and paired t-tests"
kubernetes-introduction
Reproducible Computational Environments Using Containers: Introduction to Kubernetes
nf-genomeresolvedmetagenomics
A nextflow pipeline to perform genome resolved metagenomics
pgm2022-sourceseparationnar
Experiments and code of the paper "Online Single-Microphone Source Separation using Non-Linear Autoregressive Models"
utk_collectionbuilder_workshop
This is a test collection for the CollectionBuilder workshop at UTK.
shrinkcovmat
Provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
webr
The statistical language R compiled to WebAssembly via Emscripten, for use in web browsers and Node.
https://github.com/cytomining/deepprofiler
Morphological profiling using deep learning
https://github.com/aiidateam/acwf-verification-scripts
Scripts to run and perform data analysis on the AiiDA common workflows (ACWF) subproject on verification
@stdlib/stats-base-dists-chisquare-stdev
Chi-squared distribution standard deviation.
@stdlib/ndarray-base-bytes-per-element
Return the number of bytes per element provided an underlying array data type.
libhydrogen
A lightweight, secure, easy-to-use crypto library suitable for constrained environments.
pylcaio
A Python class to hybridize lifecycle assessment (LCA) and environmentally extended input-output (EEIO) databases.
outsider
outsider: Install and run programs, outside of R, inside of R - Published in JOSS (2020)
mpnum
mpnum: A matrix product representation library for Python - Published in JOSS (2017)
https://github.com/cedrickchee/awesome-ml-model-compression
Awesome machine learning model compression research papers, quantization, tools, and learning material.
rdefra
rdefra: Interact with the UK AIR Pollution Database from DEFRA - Published in JOSS (2016)
occupationcoder
Given a job title and job description, the algorithm assigns a standard occupational classification (SOC) code to the job.
@stdlib/stats-base-dists-beta-pdf
Beta distribution probability density function (PDF).
@stdlib/stats-base-dists-gamma-pdf
Gamma distribution probability density function (PDF).
tamga
A modern, high-performance logging utility for Python with multiple output formats and colorful console output.
OMEinsumContractionOrders
Tensor network contraction order optimizers (not only) for OMEinsum
@stdlib/ndarray-base-strides2order
Determine the order of a multidimensional array based on a provided stride array.
lkh
A super simple Python wrapper for the constrained traveling salesman and vehicle routing problem solver LKH-3.
org.tinfour:Tinfour
Delaunay and Constrained Delaunay Triangulations in Java, providing high-performance utilities for modeling surfaces with support for Lidar LAS files, Digital Elevation Models (DEM), finite element analysis, path planning, natural neighbor interpolation, and other applications of Triangulated Irregular Networks (TIN)
quokka
Two-moment AMR radiation hydrodynamics (with self-gravity, particles, and chemistry) on CPUs/GPUs for astrophysics
laicrypto
LAI is a promising post-quantum cryptosystem based on isogenies of elliptic curves over lemniscate lattices, offering resistance against quantum-capable adversaries.
@stdlib/stats-base-dists-gamma-logpdf
Gamma distribution logarithm of probability density function (PDF).
clarity-upscaler
Clarity AI | AI Image Upscaler & Enhancer - free and open-source Magnific Alternative