GitHub
A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it.
A reusable tree-based web-visualization to browse EDAM ontology, and contribute to it. - Published in JOSS (2018)
HelpMe Command Line Helper Utility
HelpMe Command Line Helper Utility - Published in JOSS (2018)
AncesTrim - a tool for trimming complex pedigrees
AncesTrim - a tool for trimming complex pedigrees - Published in JOSS (2017)
2025-08-18-olemiss
Library Carpentry Workshop at the University of Mississippi
analog-circuit-design
Course material for a basic hands-on analog circuit design course with IC emphasis
mpox_ampseq
Mpox_AmpSeq is a custom nextflow-style pipeline for mpox F13L amplicon sequencing. It generates reference-based consensus sequences, variant reports, NextClade outputs including clade designation, and multiple quality control metrics.
lmrrfactory
Automatically generates LMR-R reactions (and mechanisms) according to the user’s choice of Plog, Troe, or Chebyshev sub-formats
cellprofiler-on-terra
Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.
artist
A differentiable ray tracer using the PyTorch machine-learning framework in Python.
pedestrian-detection-system
Developed a YOLOv5-based pedestrian detection model, optimized for real-time tracking in high-traffic environments, improving detection accuracy and response time.
fitbit-data-pipeline
A pipeline that automate Fitbit OAuth2 authorisation and collects sleep, activity and heart rate data from Fitbit devices
098-efvae-efficient-federated-variational-autoencoder-for-collaborative-filtering
stats-strided-nanvariancepn
Calculate the variance of a strided array ignoring NaN values and using a two-pass algorithm.
matex
Code for extrapolation in materials property prediction as proposed in "Known Unknowns: Out-of-Distribution Property Prediction in Materials and Molecules".
lang-myv
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Erzya language
svrstormsig
roseui
Rose UI
constraintlearning.jl
A Julia package for people that love to learn new things about constraints
oscofo
OScofo is a library dedicated to the research of score following in contemporary music contexts.
iohub
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
2025-asr-plms
Exploring the intersection of Ancestral Sequence Reconstruction, Protein Language Models, and Consensus Bias
frescobaldi_fiori_musicali
https://dcmlab.github.io/frescobaldi_fiori_musicali/
james-s-eve-dimming-index-jedi
Detect and characterize coronal dimming in the Solar Dynamics Observatory Extreme Ultraviolet Variability Experiment data
transform_bkq
Transform the crystal field parameters Bkq for extended Stevens operators when the reference frame is rotated.
epyscan
Create campaigns of EPOCH runs over a given parameter space using various sampling methods
ping-agent-kit
Integrate any AI agents with Solana-based protocols.
prompt-engineer-for-revision-and-development
Guides, papers, lecture, notebooks and resources for prompt engineering
starter-rust-crate
Starter Rust crate
nomad-material-processing
A NOMAD plugin containing base sections for material processing.
elicito
A python package for learning prior distributions based on expert knowledge
diffusers_20250422
pymolshortcuts
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
are-konsultationsinzidenz
Zur Einschätzung der Krankheitslast akuter Atemwegsinfektionen im ambulanten Bereich wird die Inzidenz der Arztbesuche wegen einer akuten respiratorischen Erkrankung pro 100.000 Einwohner mit Daten aus einem Netzwerk primärversorgender Praxen in Deutschland wöchentlich berechnet (ARE-Konsultationsinzidenz). Zeitnahe und valide Daten über die Häu...
proof-of-the-riemann-hypothesis-via-a-self-adjoint-operator
Proof of the Riemann Hypothesis via a Self-Adjoint Operator
