GitHub
rnaseq
nf-core/rnaseq fork; RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
distillnerf
[NeurIPS 2024] DistillNeRF: Perceiving 3D Scenes from Single-Glance Images by Distilling Neural Fields and Foundation Model Features
https://github.com/digital-porous-media/dpm_docs
Digital Rocks Portal Documentation (Demo)
https://github.com/digital-porous-media/dpm_srg
Multi-Seeded Region Growing Segmentation
most-different-text-selection
Use embedding data from LLMs to determine the most different text in a given corpus.
extendeddfml
R package implementing the Extended Dynamic Factor Machine Learner multivariate forecasting method
https://github.com/digital-porous-media/dpm_fno_workshop
2025 Workshop on Fourier Neural Operators
https://github.com/digital-work-lab/handbook
📖 The handbook of the digital work lab
https://github.com/digital-work-lab/labot
LaBot is a bot facilitating work in the digital-work-lab
triplecolocalization
Program used to calculate the colocalization between three color channels during immunofluoresence micoscopy. Program will calculate the percentage of overlap of channel 1 to both channels 2 and 3 together. Output colocalization is based on Manders' Colocalization Coefficient
https://github.com/digital-work-lab/open-source-collaboration-game
https://github.com/digital-work-lab/thesis-template
Template for Bachelor's and Master's theses
hotsniper
An EDA toolchain for interval thermal simulations of 2D multi-/many-cores in an open system.
atomec
Mirror of the atoMEC repository. Please do not post issues or pull requests here. Use https://github.com/atomec-project/atoMEC instead.
https://github.com/crotwell/seisfile
A library for reading and writing seismic file formats in java.
llm_simpy
Research Compendium for exploring the ability of LLMs to generate SimPy models and streamlit interfaces.
https://github.com/digitalearthafrica/deafrica-sandbox-custom-ui
Custom UI for Sandbox authentication
face_recognition-analysis
This is Fashion High quality Face Recognition and Attribute Analysis Library
clustenergy_optool
Python tool for evaluating the energy flexibility provided by a user-defined cluster of buildings via optimized control
ontologyenrichment
Command line tool to perform functional annotation and ontology enrichments for Chlamydomonas and Arabidopsis
https://github.com/dhruvvkdv/teaching-assistant-frontend
AI-Enhanced Teaching Assistant: Bridging Instructor Knowledge and Web Intelligence. Features user authentication, instructor portal, multi-language support, and AWS integration.
https://github.com/dhruvvkdv/teaching-assistant
AI-Enhanced Teaching Assistant: Bridging Instructor Knowledge and Web Intelligence
phoebe
A high-performance framework for solving phonon and electron Boltzmann equations
metan_ammi_suite
Your one-stop solution for comprehensive genotype × environment interaction and stability analysis (AMMI model) using the metan package. Save time, perform analyses for all traits at once, and gain insightful visualizations effortlessly!"
cucumber_YOLOv5n_IouKMeans_GMM_updated
https://github.com/duclong1608hust/cucumber_YOLOv5n_IouKMeans+GMM
https://github.com/dhruvvkdv/aws_basics
Experimenting with different AWS Services
https://github.com/dhruvvkdv/amplify-vite-react-template
My Amplify Gen 2 starter application
https://github.com/dhruvvkdv/shortest-path-grocery-store
Shortest Path Grocery Store
permutools
A MATLAB package for multivariate permutation testing and effect size measurement
https://github.com/dhschall/repo-statistics
Helper repository to collect statistics from different repostories
queerganteanga_data_and_analysis
Datasets and analysis utilities to support research connected to the 'Queer Gan Teanga' paper
https://github.com/dhschall/ubench
Suite of microbenchmarks to test microarchitectural components in gem5
https://github.com/dhschall/gem5-svr-bench
A framework to run various server workloads on gem5
https://github.com/dhschall/bibutil
Utility tool to download bib references from DBLP
numerical_cv_sim_1d_diffusion
matlab code developed to simulate cyclic voltammetry for thin-film ion insertion electrodes. Code assumes 1D geometry and no resistance.
https://github.com/crowdstrike/foundry-sample-servicenow-idp
ServiceNow CMDB Ingest For Identity Protection sample Foundry app
lang-tlh
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Klingon language
plf-es-2023-1-ti2-0924100-skanboo
plf-es-2023-1-ti2-0924100-skanboo created by GitHub Classroom
https://github.com/giorgiaauroraadorni/gansformer
Generative Adversarial Transformers
https://github.com/dhschall/binary-neural-networks
Exploring "Binary Neural Networks" (https://arxiv.org/abs/1602.02830) in Theano. A set of experiments that use binarised weights and/or activations to reduce computational load of convolutional neural networks.
https://github.com/dhslab/dhslab-docker-images
Docker images for the Spencer lab
https://github.com/dhslab/covfast
Small c program to calculate coverage from a bam/cram over bed intervals
https://github.com/dhslab/epibench
EpiBench is a software tool designed for predicting DNA methylation levels using genomic sequence data and histone modification marks. It employs a multi-branch CNN architecture tailored for integrating these data types to achieve high prediction accuracy.
https://github.com/dhslab/peakachu-cohort
Wraps Peakachu’s train and score_genome functions in a parallelized CLI subcommand enabling scalable analysis across cohorts without manual per-sample commands.
https://github.com/dhslab/methfast
Simple c program for manipulating bed-like methylation files
