GitHub
quarto-lua-env
lua-env is an extension for Quarto to provide access to LUA objects as metadata.
reproducibility-aaai24
Reproduce. Replicate. Reevaluate. The long but safe way to extend machine learning methods.
rsvrecon
A pipeline for assembling genomic sequences of respiratory syncytial virus (RSV) from NGS data
hugo-bibliography
Hugo Bibliography is a Hugo module to add bibliographies to Hugo sites.
brainglobe
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
fast-exhibit-templates
Three exhibit experience templates that allow museum professionals to create their own FAST tables without having to start from the beginning.
jitr
A fast just-in-time (JIT) compiled calculable R-matrix solver for parametric reaction models, production ready for calibration and uncertainty-quantification.
verdd
Veʹrdd is an open-source dictionary editing framework with the focus on low-resourced and endangered languages. The framework is mainly built to facilitate collecting, importing, editing and exporting dictionaries while allowing the involvement of the native speakers to contribute easily to the preservation of the language and construction of the dictionary.
pyrddlgym-jax
JAX compilation of RDDL description files, and a differentiable planner in JAX.
quantum-mechanics-notes-2
second part of the course plus the first part will mush in
stats-array-nanvariancetk
Calculate the variance of an array ignoring `NaN` values and using a one-pass textbook algorithm.
presentations_dri-ecr-vascular_reproducibility_2024-03-14
Repo of resources for my talk on reproducibility at the UKDRI ECR Vascular meeting 2024
python-aspen-plus-connected-model-for-the-calculation-of-equipment-costs
Python code packages for the calculation of CAPEX (using cost correlations of Seider et al. (2009)) of equipment pieces (e.g. reactor, heat exchangers, distillation columns, etc.) that were simulated in Aspen Plus (connected python and aspen plus model).
four_probe_res
Code to Run four-probe resistance measurements with Keithley 2400 and 2182
ai-nonogram-puzzle-solver
🧠 AI-powered Nonogram Solver using Simulated Annealing 🧩 Solve logic grid puzzles intelligently with Python + Turtle 🐢✨
community-aware-graph-transformer
Community-aware Graph Transformer (CGT) is a novel Graph Transformer model that utilizes community structures to address node degree biases in message-passing mechanism and developed by NS Lab @ CUK based on pure PyTorch backend.
2025-05-11-dcc-po
Gitpage for Carpentry Workshop organised by DCC-PO on 11th and 12th of June 2025
competitive-programming
Here are some solutions to leetcode or competitive programming problems i made
blas-base-wasm-dznrm2
Compute the L2-norm of a complex double-precision floating-point vector.
blas-base-wasm-sdsdot
Calculate the dot product of two single-precision floating-point vectors with extended accumulation.
api-integration
Integration with APIs for Park-Prompt and other park-pliant services.
reinforcement-learning-for-scripts-of-tribute
This is the corresponding Github repository of our paper "Training a Reinforcement Learning Agent for Tales of Tribute".
syne-tune
Large scale and asynchronous Hyperparameter and Architecture Optimization at your fingertips.
https://github.com/demoriarty/flash-attention
Fast and memory-efficient exact attention
haarpy
Haarpy is a Python library for the symbolic calculation of Weingarten functions and related averages of unitary matrices sampled uniformly at random from the Haar measure.
stats-strided-smean
Calculate the arithmetic mean of a single-precision floating-point strided array.
leafwaxtools
A package for calculating common indices from plant leaf wax distributions and isotopic data
agent-based-evolutionary-game-dynamics
NetLogo models developed in the book "Agent-Based Evolutionary Game Dynamics"
cmipsummary
A summary paper describing climate science MIP history and evolution
stats-strided-dmaxabssorted
Calculate the maximum absolute value of a sorted double-precision floating-point strided array.
hictkpy
Python bindings for hictk: read and write .cool and .hic files directly from Python
topolow
A physics-inspired R package for robust Euclidean embedding of sparse, non-metric dissimilarity data. Particularly powerful for antigenic cartography and viral evolution tracking, but applicable to any domain with incomplete similarity measurements. Published in *Bioinformatics* (2025).
paidiverpy
Create pipelines for preprocessing image data for biodiversity analysis.
color-perception-task
Perceptual decision-making tasks to examine how the opinions of others change individuals’ basic perceptual processes, i.e., whether social influence can alter perception of colors.
5gc-features
This project provides a comparative analysis of various 5G Core Network (5GC) implementations, focusing on the implemented endpoints and features for each Network Function (NF)
mapseq
This repository provides an end-to-end open source pipeline for the processing of MAPseq (Marker Assisted Programming sequencing) data.
pyfixest
Fast High-Dimensional Fixed Effects Regression in Python following fixest-syntax
msf-proyecto-final
Dinámica y Control del Eje Endocrino en el Síndrome de Cushing
archeo
Bayesian framework for inferring natal kick, ancestral masses and spins of black holes.
qc-partial-charges-amber
Step-by-step procedure for calculating partial atomic charges compatible with the AMBER General Force Field (GAFF), using quantum calculation using the GAMESS software and Antechamber using RESP fitting method.
nianetcae
Designing and constructing convolutional autoencoders using nature-inspired algorithms
lang-epo
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Esperanto language
the-professor
A modular AI persona for ethical peer review, built using the DigitalEgo and AI Cabinet frameworks.
lang-pad
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Paumarí language
lang-rmy
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Vlax Romani language
