GitHub
https://github.com/chris-prener/testdriver
R package with data for teaching Statistics and Data Science
CusToM
CusToM: a Matlab toolbox for musculoskeletal simulation - Published in JOSS (2019)
resmush
Compress local and online images using the reSmush.it API service https://resmush.it/
Optlang
Optlang: An algebraic modeling language for mathematical optimization - Published in JOSS (2017)
PTXQC
A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
Xenomapper
Xenomapper: Mapping reads in a mixed species context - Published in JOSS (2016)
yatiml
Python library for YAML type inference, schema checking and syntactic sugar
cnr-flow
CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.
pywr
Pywr is a generalised network resource allocation model written in Python.
distilabel
Distilabel is a framework for synthetic data and AI feedback for engineers who need fast, reliable and scalable pipelines based on verified research papers.
ampligone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
cloud-init-examples
This repository includes an example of cloud-init YAML files for use with multipass VMs.
pyscal
pyscal: A python module for structural analysis of atomic environments - Published in JOSS (2019)
https://github.com/asfhyp3/asf-tools
A collection of GIS tools for working with higher-level SAR products
ingestr
Data ingest for points (given longitude, latitude, and required dates) from large global files or remote data servers and create time series at user-specified temporal resolution.
tclf
A scikit-learn compatible classifier to perform trade classification in Python.
statxplore
This is a data harvester for the Department for Work and Pensions Stat-Explore
cobramod
CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway information from various metabolic pathways databases or user-curated data sets.
nv-ingest
NeMo Retriever extraction is a scalable, performance-oriented document content and metadata extraction microservice. NeMo Retriever extraction uses specialized NVIDIA NIM microservices to find, contextualize, and extract text, tables, charts and images that you can use in downstream generative applications.
ggRandomForests
Graphical analysis of random forests with the randomForestSRC, randomForest and ggplot2 packages.
https://github.com/catalyst-cooperative/pudl-archiver
A tool for capuring snapshots of public data sources and archiving them on Zenodo for programmatic use.
plot-keras-history
A simple python package to print a keras NN training history.
ReservoirComputing
Reservoir computing utilities for scientific machine learning (SciML)
DiffEqParamEstim
Easy scientific machine learning (SciML) parameter estimation with pre-built loss functions
loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
RL
RL: Generic reinforcement learning codebase in TensorFlow - Published in JOSS (2019)
betaNB
betaNB: Generates nonparametric bootstrap confidence intervals for standardized regression coefficients and other effect sizes for models fitted by lm().
gchp
The "superproject" wrapper repository for GCHP, the high-performance instance of the GEOS-Chem chemical-transport model.
thermo
Thermodynamics and Phase Equilibrium component of Chemical Engineering Design Library (ChEDL)
Gillespie.jl
Gillespie.jl: Stochastic Simulation Algorithm in Julia - Published in JOSS (2016)
@stdlib/stats-lowess
Locally-weighted polynomial regression via the LOWESS algorithm.
FlexPlan.jl
Open-source Julia tool for transmission and distribution expansion planning considering storage and demand flexibility
Capytaine
Capytaine: a Python-based linear potential flow solver - Published in JOSS (2019)
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
MAPL
MAPL is a foundation layer of the GEOS architecture, whose original purpose is to supplement the Earth System Modeling Framework (ESMF)
causalnex
A Python library that helps data scientists to infer causation rather than observing correlation.
datatrove
Freeing data processing from scripting madness by providing a set of platform-agnostic customizable pipeline processing blocks.
science.aist
Transformation from HL7® FHIR® Audit Events to eXtensible Event Stream (XES)
doublemanning
Fits a rating curve using separate Manning's relationships for the channel (rectangular) and floodplain (power-law hypsometry)
code_dcf
This repository contains the firth bias reduction experiments on the few-shot distribution calibration method conducted in the ICLR 2022 spotlight paper "On the Importance of Firth Bias Reduction in Few-Shot Classification".
science.aist
Transformation from HL7® FHIR® Audit Events to Object-Centric Event Logs
@stdlib/utils-native-class
Determine the specification defined classification of an object.
@stdlib/math-base-napi-unary
C APIs for registering an N-API module exporting an interface for invoking a unary numerical function.
cleopy
Clara Bayley's version of the superdroplet model. CLEO is short for Cleopatra and Clouds through Lagrangian Exascale micrO-physics
qqplotr
Extending some ggplot2 functionalities by permitting the drawing of both quantile-quantile (Q-Q) and probability-probability (P-P) points, lines, and confidence bands
pyemu
python modules for model-independent uncertainty analyses, data-worth analyses, and interfacing with PEST(++)
https://github.com/cvxgrp/cvxr
An R modeling language for convex optimization problems.
kinisi
kinisi: Bayesian analysis of mass transport from molecular dynamics simulations - Published in JOSS (2024)
