dabestr • Rank 13.4 • Science 46%

Data Analysis with Bootstrap Estimation in R

yamlfixer-opt-nc • Rank 15.4 • Science 44%

Automates the fixing of problems reported by yamllint by parsing its output

docling-mcp • Rank 15.4 • Science 44%

Making docling agentic through MCP

runcom • Rank 15.4 • Science 44%

A XDG enhanced run command manager for command line interfaces.

stemmus_scope_processing • Rank 5.4 • Science 54%

Python modules and notebooks to process data and run STEMMUS-SCOPE model

com.wgzhao.addax:addax-all • Rank 15.4 • Science 44%

A fast and versatile ETL tool that can transfer data between RDBMS and NoSQL seamlessly

ska • Rank 15.4 • Science 44%

Split k-mer analysis – version 2

gridpath • Rank 13.4 • Science 46%

A versatile simulation and optimization platform for power-system planning and operations.

introdataviz • Rank 5.4 • Science 54%

mmflow • Rank 15.3 • Science 44%

OpenMMLab optical flow toolbox and benchmark

bety • Rank 8.3 • Science 51%

Web-interface to the Biofuel Ecophysiological Traits and Yields Database (used by PEcAn and TERRA REF)

Rhisat2 • Rank 13.3 • Science 46%

R wrapper around the hisat2 aligner.

apcemm • Rank 5.3 • Science 54%

Aircraft Plume Chemistry, Emissions, and Microphysics Model

arts-localisation • Rank 5.3 • Science 54%

Localisation of ARTS transients

champsim • Rank 5.3 • Science 54%

q-galore • Rank 5.3 • Science 54%

Q-GaLore: Quantized GaLore with INT4 Projection and Layer-Adaptive Low-Rank Gradients.

p4pdes • Rank 5.3 • Science 54%

C and Python examples from my book on using PETSc and Firedrake to solve PDEs

@stdlib/math-base-special-ldexp • Rank 15.3 • Science 44%

Multiply a double-precision floating-point number by an integer power of two.

shinyscholar • Rank 10.3 • Science 49%

A template for creating modular shiny applications that meet academic standards and are reproducible

https://github.com/yzhao062/pyod • Rank 13.3 • Science 46%

A Python Library for Outlier and Anomaly Detection, Integrating Classical and Deep Learning Techniques

ccmetagen • Rank 10.3 • Science 49%

Microbiome classification pipeline

mesmer • Rank 10.3 • Science 49%

spatially-resolved ESM-specific multi-scenario initial-condition ensemble emulator

tree-sitter-ssh-client-config • Rank 15.3 • Science 44%

tree-sitter grammar for SSH client configuration files

containers-workshop • Rank 5.3 • Science 54%

ros-gazebo-gym • Rank 5.3 • Science 54%

Framework for integrating ROS and Gazebo with gymnasium, streamlining the development and training of RL algorithms in realistic robot simulations.

jupyter-doexport • Rank 5.3 • Science 54%

A custom exporter to export Stata Jupyter Notebooks to do-files

callingcards • Rank 2.3 • Science 57%

A pipeline for processing calling cards data

ta-prm • Rank 2.3 • Science 57%

Time-Aware Probabilistic Roadmaps (TA-PRM*)

xrayattenuation • Rank 2.3 • Science 57%

A library to compute transmission / absorption of X-rays through matter

xbcf • Rank 2.3 • Science 57%

Predicting BCF values with explanations

multilevelcoda • Rank 10.3 • Science 49%

multilevelcoda R package for Bayesian multilevel compositional data analysis

gradients • Rank 5.3 • Science 54%

Build your deep learning algorithms with confidence

sklearn-genetic • Rank 15.3 • Science 44%

Genetic feature selection module for scikit-learn

ManualNLPModels • Rank 5.3 • Science 54%

NLPModel where all functions are defined by the user

Santiago • Rank 5.3 • Science 54%

Sanitation System Alternative Generator

https://github.com/biojulia/fastx.jl • Rank 13.3 • Science 46%

Parse and process FASTA and FASTQ formatted files of biological sequences.

automation • Rank 5.3 • Science 54%

Modular, Scalable Phenomic Data Processing Pipelines

gaudi • Rank 5.3 • Science 54%

GaudiMM: A modular optimization platform for molecular design

pennyworth • Rank 15.3 • Science 44%

A command line interface for augmented Alfred workflows.

training-docker • Rank 5.3 • Science 54%

Software carpentry lesson about Docker

TensorRefinement • Rank 5.3 • Science 54%

A package for low-rank computations with functions in Julia

dwarfs • Rank 15.3 • Science 44%

A fast high-compression read-only file system for Linux, FreeBSD, macOS and Windows

triqler • Rank 13.3 • Science 46%

The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code

metabook • Rank 5.2 • Science 54%

rename and organize your pdf book collection

architect • Rank 5.2 • Science 54%

A tool that builds Network Canvas interviews.

multivar_horner — Peer-reviewed • Rank 10.2 • Science 49%

multivar_horner: A Python package for computing Horner factorisations of multivariate polynomials - Published in JOSS (2020)

contextgem • Rank 15.2 • Science 44%

ContextGem: Effortless LLM extraction from documents

pymare • Rank 13.2 • Science 46%

PyMARE: Python Meta-Analysis & Regression Engine

scicrypt • Rank 15.2 • Science 44%

Lightweight cryptographic building blocks for multi-party computation.

orthofisher • Rank 10.2 • Science 49%

a broadly applicable tool for automated gene identification and retrieval

segments-ai • Rank 15.2 • Science 44%

Segments.ai Python SDK

nigsp • Rank 10.2 • Science 49%

NiGSP: a module for graph signal processing on neuroimaging data

https://github.com/gradio-app/fastrtc • Rank 23.2 • Science 36%

The python library for real-time communication

arch2020_nln_re • Rank 2.2 • Science 57%

Repeatability Evaluation package for the ARCH2020 NLN Competition

https://github.com/alleninstitute/sea-ad_2024 • Rank 2.2 • Science 57%

readepi • Rank 5.2 • Science 54%

An R package for importing epi data into R.

lableme_demo • Rank 5.2 • Science 54%

ichthyop • Rank 5.2 • Science 54%

Python library for the analysis of Ichthyop outputs

ueqplusanalyze • Rank 5.2 • Science 54%

UEQ+ Data Analyzer based on the given Tool from https://ueqplus.ueq-research.org/

lcbench • Rank 5.2 • Science 54%

A learning curve benchmark on OpenML data

sipnet • Rank 5.2 • Science 54%

Simplified Photosynthesis and Evapotranspiration Model: process-based ecosystem model for simulating carbon and water fluxes.

lib_rapid • Rank 15.2 • Science 44%

An optimised derivative of the LibRapid C++ library. Made with love for mathematics and computer science.

EvoMaster — Peer-reviewed • Rank 13.2 • Science 46%

EvoMaster: A Search-Based System Test Generation Tool - Published in JOSS (2021)

https://github.com/cqcl/cryptomite • Rank 10.1 • Science 49%

Python library of efficient and numerically-precise randomness extractors

https://github.com/cthoyt/zenodo-client • Rank 13.1 • Science 46%

A tool for automated uploading and version management of scientific data to Zenodo

fastopenapi • Rank 15.1 • Science 44%

FastOpenAPI is a library for generating and integrating OpenAPI schemas using Pydantic v2 and various frameworks (AioHttp, Falcon, Flask, Quart, Sanic, Starlette, Tornado).

https://github.com/boutproject/xbout • Rank 13.1 • Science 46%

Collects BOUT++ data from parallelized simulations into xarray.

explorer • Rank 5.1 • Science 54%

Neotoma Explorer - issue tracker and code repository

genepro • Rank 5.1 • Science 54%

A baseline implementation of genetic programming (using trees to encode programs) with some examples of usage.

repro-workshop • Rank 5.1 • Science 54%

pizazz • Rank 5.1 • Science 54%

Easy configuration and control of 74HC595 Shift Registers with a Raspberry Pi

scperturb • Rank 13.1 • Science 46%

scPerturb: A resource and a python/R tool for single-cell perturbation data

table-and-graph-libs • Rank 5.1 • Science 54%

📈 Console Table and Graph/Plot Libraries

runpynb • Rank 5.1 • Science 54%

Run Jupyter notebooks in command-line and Makefiles.

navigator • Rank 15.1 • Science 44%

A Rails domain specific language for menu navigation.

environment-and-sustainability-gc-community • Rank 2.1 • Science 57%

Community pages for Turing E&S Grand Challenge

plumb • Rank 2.1 • Science 57%

Protein-ligand unified metrics benchmark (PLUMB): dataset to benchmark force field and free energy methods

diffusional-fitter • Rank 2.1 • Science 57%

This program fits diffusional baselines to cyclic voltammetry data, allowing for a more accurate measurement of peak Faradaic current than linear methods.

exfilms • Rank 2.1 • Science 57%

A command-line interface tool to extract, filter, and standardise mass spectrometry data.

airguard-ios • Rank 5.1 • Science 54%

Protect yourself from being tracked 📍by AirTags, SmartTags, Chipolo, Google, and Tile Trackers

nvgraph.sh • Rank 5.1 • Science 54%

CLI for nvGraph, which is a GPU-based graph analytics library written by NVIDIA, using CUDA.

mariopy • Rank 10.1 • Science 49%

Multifunctional Analysis of Regions through Input-Output

ukbnmr • Rank 10.1 • Science 49%

Tools for processing Nightingale NMR biomarker data in UK Biobank

awesome-agriculture • Rank 10.1 • Science 49%

Open source technology for agriculture, farming, and gardening

openhands • Rank 15.1 • Science 44%

👐OpenHands : Making Sign Language Recognition Accessible. | **NOTE:** No longer actively maintained. If you are interested to own this and take it forward, please raise an issue

ldrb • Rank 5.0 • Science 54%

A software for assigning myocardial fiber orientations based on the Laplace Dirichlet Ruled-Based algorithm

https://github.com/myshell-ai/openvoice • Rank 13.0 • Science 46%

Instant voice cloning by MIT and MyShell. Audio foundation model.

HiContacts • Rank 13.0 • Science 46%

Analyzing Hi-C data in R with HiCExperiment objects

pysnirf2 • Rank 13.0 • Science 46%

Python package for reading, writing and validating Shared Near Infrared Spectroscopy Format (SNIRF) files

stable-gym • Rank 5.0 • Science 54%

This package contains several gymnasium environments with positive definite cost functions, designed for compatibility with stable RL agents.

intern • Rank 13.0 • Science 46%

Python SDK for interacting with the BossDB REST API

porescale • Rank 5.0 • Science 54%

offlinerl-lib • Rank 5.0 • Science 54%

Benchmarked implementations of Offline RL Algorithms.

semPower • Rank 10.0 • Science 49%

R package providing a-priori, post-hoc, and compromise power analyses for structural equation models (SEM)

pickydict • Rank 15.0 • Science 44%

More picky version of Python dictionary

@stdlib/assert-is-big-endian • Rank 15.0 • Science 44%

Check if an environment is big endian.

ConstrainedShortestPaths • Rank 5.0 • Science 54%

Julia implementation of (resource) Constrained Shortest Path algorithms

hyperreal • Rank 5.0 • Science 54%

A Python package for interpretive topic modelling

SimSurvey • Rank 10.0 • Science 49%

A tool for comparing the design and analysis of surveys by simulating spatially-correlated populations

multi-vector-simulator • Rank 13.0 • Science 46%

Multi-vector Simulation Tool assessing and optimizing Local Energy Systems (LES) for the E-LAND project