GitHub
sifrc
Python implementation of the Fourier Ring Correlation (FRC) to determine image resolution
irl-maxent
Maximum Entropy and Maximum Causal Entropy Inverse Reinforcement Learning Implementation in Python
samap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
audioset-convnext-inf
Adapting a ConvNeXt model to audio classification on AudioSet
qcd
Quantum Circuit Designer: A gymnasium-based set of environments for benchmarking reinforcement learning for quantum circuit design.
calcam
Python package of spatial calibration tools for science & engineering camera systems.
rdflib-endpoint
💫 Deploy SPARQL endpoints from RDFLib Graphs to serve RDF files, machine learning models, or any other logic implemented in Python
https://github.com/alleninstitute/all-active-workflow
Creating the code base for All-active Model generation written on top of Bluepyopt
corrupted-text
A python library to generate out-of-distribution text datasets. Specifically, the library applies model-independent, commonplace corruptions (not model-specific, worst-case adversarial corruptions). We thus aim to allow benchmark-studies regarding robustness against realistic outliers.
https://github.com/broadinstitute/celligner_ms
Code related to the Celligner manuscript
educarencomunidad.tech
Versión en español de Enseñar Tecnología en Comunidad (Teaching Tech Together)
rho-diffusion
Parameterizing n-dimensional density fields using denoising diffusion probabilistic models
aeolus-ocean
An all-weather, day-and-night, collision avoidance simulator that can be implemented as a digital twin for the autonomous COLREG-compliant navigation of maritime vessels.
pymsaviz
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database
CAZy-parser a way to extract information from the Carbohydrate-Active enZYmes Database - Published in JOSS (2016)
ee-cptcity
ee-cptcity is a module for Google Earth Engine where you can find multiple colour palettes of different themes related to cartography, technical illustration and design. Currently ee-cptcity module has more 300 of color palettes available for the users.
gym-marl-reconnaissance
Gym environment for cooperative multi-agent reinforcement learning in heterogeneous robot teams
openqa-eval
ACL 2023: Evaluating Open-Domain Question Answering in the Era of Large Language Models
octave-tutorial
Octave programming tutorial based on SW carpentry's Programming with MATLAB
apertium-fin-eng
Apertium bilingual lexical data for Finnish–English machine translation
turn_by_turn
I/O functionality for turn-by-turn BPM measurements data from different particle accelerators
https://github.com/drorlab/pensa
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
knowgo-vehicle-simulator
An interactive multi-platform Connected Car simulator for generating and streaming realistic vehicle telemetry.
ml-keyframer
Keyframer: Empowering Animation Design Using Large Language Models
yeast-in-microstructures-dataset
Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].
r-genomics-in-development
Development repo for a revamp of the Data Carpentry R genomics lessons
pyempatica
Python wrapper for Empatica TCP client, allowing bidirectional communication with an Empatica E4.
https://github.com/biocomputingup/cafa-evaluator
A Python Tool for Benchmarking Ontological Classification Methods
learnenvirodiy
A tutorial for learning how to program an Arduino-framework micro-controller to become an environmental data logger.
https://github.com/astropy/astropy-v2.0-paper
Repository for the second Astropy paper
squire_2021_fire_susceptibility
Codes used to perform the analysis and generate the figures in Squire et al. 2021
structure-seer
The implementation, training and evaluation of a Structure Seer machine learning model designed for reconstruction of adjacency of a molecular graph from the labelling of its nodes.
transit-lab-simmetro-docs
TransitLab SimMETRO is an urban heavy-rail operations simulation model developed at the MIT Transit Lab, built upon decades of research. This repository contains a comprehensive documentation. While the full package may not be open-sourced soon, the documentation provides valuable insights into the capabilities of the simulation model.
stats-base-dvariancewd
Calculate the variance of a double-precision floating-point strided array using Welford's algorithm.
ieee_tste_2023
Companion Jupyter notebook to our 2023 IEEE TSTE paper "Control Co-Design of Power Take-off Systems for Wave Energy Converters using WecOptTool"
lbsocial-tgis
A GIS tool and demo dataset for analyzing location‐based social media activities
policy-general
[MIRROR] General business conducts with (Holloway) Chew, Kean Ho in open-source, personal, and commercial environment.
density-paper-2019-r-experiments
A repository to hold the R notebooks that we created to conduct experiments for our paper on Density
climag
EPA Research Project: Multifactorial causes of fodder crises in Ireland and risks due to climate change
olsen-randerson
Functions to perform the carbon dioxide flux temporal downscaling described in Olsen and Randerson (2004) and modifications from Fisher et al. (2016)
propertyeval
PropertyEval: Synthesizing Thorough Test Cases for LLM Code Generation Benchmarks using Property-Based Testing