GitHub
minmutfinder
Tool written in Python and Bash implemented in a Nextflow pipeline that accurately identifies mutations and assesses their frequencies, accounting for multiple nucleotide mutations occurring within a single codon. Additionally, it can annotate mutations associated to phenotypical changes in viral populations based on user-supplied datasets.
spezichat
Spezi Module to Handle and Display User Interfaces for Chat-based Interactions
wavesongs
Python packing of the physical model motor gestures to characterize and create birdsongs
gr-lora_sdr
This is the fully-functional GNU Radio software-defined radio (SDR) implementation of a LoRa transceiver with all the necessary receiver components to operate correctly even at very low SNRs. This work has been conducted at the Telecommunication Circuits Laboratory, EPFL.
blinkr
BlinkR is a teaching app to help students plan, run, and analyse an experiment
orthanc-gcp
This is a read-only mirror of https://hg.orthanc-server.com/orthanc-gcp/
workshop2024-lesson-dataset-scouting
Dataset scouting pre-exercise for the 2024 CMS Open Data Workshop
explainpolysvm
ExplainPolySVM is a python package to provide interpretation and explainability to Support Vector Machine models trained with polynomial kernels. The package can be used with any SVM model as long as the components of the model can be extracted.
array-base-broadcasted-quinary4d
Apply a quinary callback to elements in five broadcasted input arrays and assign results to elements in a four-dimensional nested output array.
openjphpy
A Python wrapper for OpenJPH for encoding/decoding High-Throughput JPEG 2000 (HTJ2K)
multilc_areaestimation_uq
An interactive tool for assessing the accuracy of multi-class land cover maps, estimating area, and quantifying uncertainty. The methodology is based on established practices outlined in Olofsson et al. (2013, 2014).
nestlink-pipeline
Pipeline to generate accurate consenus sequences of NestLink libraries.
https://github.com/materialsvirtuallab/matpes
A foundational potential energy dataset for materials
mgi-json-schema
The purpose of this repository is to enable community development of JSON schema within materials science and engineering.
workshop2024-lesson-event-selection
A lesson on selecting events for analysis in general, as well as the specific physics for this workshop.
FANUC-iRVision-System-Implementation
Implementation of FANUC iRVision on CRX-10iA robot for dice detection and pick-and-place using the teaching pendant.
metaboheatmap
A R/Shiny based app for visualizing metabolomics data through heatmaps
mergekit
Tools for merging pretrained Large Language Models and create Mixture of Experts (MoE) from open-source models.
mpds-aiida
Automated computational workflows based on the MPDS data platform using the CRYSTAL first-principles engine
https://github.com/apax-hub/apax
A flexible and performant framework for training machine learning potentials.
cyborg_plus_plus
CAGE Challenge 2 with bug fixes, an alternate simplified version and discussion/clarification about gameplay and using this environment.
stars-shiny-simmer
WORK IN PROGRESS: An example R shiny interface to a simmer DES model.
stars-treat-simmer-quarto-wasm
WASM deployed implementation of https://github.com/pythonhealthdatascience/stars-treat-simmer using Quarto Live
pinns_mapi-3
Repositorio con el material para el taller sobre PINNs en MAPI-3 2024
metabolomics_mdd
Code for analysis presented in the paper at : https://www.biologicalpsychiatryjournal.com/article/S0006-3223(23)00055-0/fulltext
quantum_heom
A tool to model the bath relaxation dynamics of open quantum systems by Lindblad and Hierarchical Equations of Motion (HEOM) approaches.
biobb-haddock
biobb_haddock is the Biobb module collection to compute information-driven flexible protein-protein docking.
instantaneouscentermethodfordiaphragms
Inelastic analysis method for steel diaphragms using the instantaneous center method
rl-st-logic-controller
Proof of concept of an implementation of control tables learn with Reinforcement Learning in a PLC
https://github.com/exabyte-io/esse
JSON schemas and examples representing structural data, characteristic properties, modeling workflows and related data about materials standardizing the diverse landscape of information
ew_djc
Support repository for the upcoming paper "Spectral response of a nonlinear Jaynes-Cummings model
drb-osemosys-model
This repository contains a collection of scripts and workflows designed to facilitate the reproduction of the results presented in the associated research article.
greentechhub
GreenTechHub: Serves to showcase innovative projects, exploring a curated library of games, and accessing embedded services that enhance user experiences.
keithley_arduino_data_logger_and_controller
A collection of Python scripts for logging sensor data from digital multimeters (Keithley, Lake Shore, Agilent), controlling pump flow rate using a Keithley 2400 SourceMeter, and analyzing the collected data.
fignumbers
A comprehensive TypeScript library for generating figurate numbers across multiple dimensions.
edmd_koopman
Repository containing generic functions for the implementation of the EDMD algorithm for the approximation of the Koopman Operator.
rolshausenlab_aspergillus_datepalm
Aspergillus tubingensis DFA genome sequencing and annotation
tiapn-template
Template para a disciplina de TI: APLICAÇÕES PARA PROCESSOS DE NEGÓCIOS
patchtrack
PatchTrack: A Comprehensive Analysis of ChatGPT’s Influence on Pull Request Outcomes
ts05-parameters-downloader
Script to download and parse W1 to W6 parameters needed for TS05 external geomagnetic field model.
https://github.com/3dgeo-heidelberg/4dgeo
4DGeo Dashboard for visualizing the results of change analysis in environmental point clouds
pyospackage
An example package that compliments our package guide & tutorials.
adolescent_normative_modeling_ct_2024
Normative Modeling of Adolescent Data: python code and data files for PNAS manuscript.
machine-learning-threshold-displacement-energy-dataset
Public dataset and analysis scripts from the manuscript "Machine Learning-Driven Analytical Models for Threshold Displacement Energy Prediction in Materials." Includes data for monoatomic and polyatomic materials, metadata, and example workflows for analysis and visualization.
maposm
R package to download, simplify and merge multiple geographic layers from OpenStreetMap for mapping purposes.
emqaoa-darbo
This is the github repo to support the manuscript "Quantum approximate optimization via learning-based adaptive optimization"
integrating-diagenetic-equations-using-python
Reactive-transport model simulating formation of limestone-marl alternations
repo-program-template
This is a repository template for internal programs developed in the Program of Computational Genomics
@stdlib/complex-float64-base-assert-is-equal
Test whether two double-precision complex floating-point numbers are equal.
biospheremetrics
This repository contains code for an R package to analyze outputs
hinteval
HintEval💡: A Comprehensive Framework for Hint Generation and Evaluation for Questions
autonomousssiishare
Implementation and evaluation of an autonomous SSI-enhanced iSHARE framework, enabling decentralized identity management, schema alignment for property matching, and automated generation of alternative verification requests, improving scalability, privacy, and flexibility in data spaces and SSI ecosystems.
grouse
Evaluate Grounded Question Answering models and Grounded Question Answering evaluator models
effortless-language-servers
Framework for Effortless Language Servers with Language Servers for SOM, SOMns, and SimpleLanguage
