GitHub
2017-11-03-test_swc
A test workshop page made as part of Carpentry Instructor Training
besser
A Python-based low-modeling low-code platform for smart and AI-enhanced software
autocycler
A tool for generating consensus long-read assemblies for bacterial genomes
mdv-climex
An RShiny web application for visualizing high frequency meteorological data and identifying extreme climate events in the McMurdo Dry Valleys of Antarctica.
studentactivismgrinnell
Documenting events of student activism at Grinnell College
smash-vhlle-hybrid
Event-by-event hybrid model for the description of relativistic heavy-ion collisions
kustvakt
:speedboat: User and policy management component for KorAP, capable of rewriting queries for policy based document restrictions.
orthanc-book
This is a read-only mirror of https://hg.orthanc-server.com/orthanc-book/
datacite_value-parser
A short Jupyter Notebook to parse DataCite Values via REST API for Statistics
des_rap_book
Step-by-step guide for building Python and R simulation models as part of a reproducible analytical pipeline (RAP).
softwarecitationtestrepo
Software citation test repo part of SURF week 2022/05/11
firebench
FireBench is a Python library designed for the systematic benchmarking and inter-comparison of fire models.
hiilonsetdetection
Reproducibility code for the ISMIR 2025 paper "Towards Human-in-the-Loop Onset Detection: A Transfer Learning Approach for Maracatu"
stats-strided-dvariancepn
Calculate the variance of a double-precision floating-point strided array using a two-pass algorithm.
2016-11-03-nsbe
SWC Workshop: NSBE Professional Development conference in Norfolk, VA
pyspex
pySpex contains software for SPEXone L0->L1A processing of OCAL and inflight measurements.
tumourevo
Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
brats
Providing top performing algorithms from the Brain Tumor Segmentation (BraTS) challenges.
asreview-dory
Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.
https://github.com/demianhj/matterport
Matterport3D is a pretty awesome dataset for RGB-D machine learning tasks :)
https://github.com/broadinstitute/regional_missense_constraint
Code to calculate regional missense constraint
org-website
This is the lab-website-template based website for the Lücken lab at the Computational Health Center at Helmholtz Munich.
inverseproblemsolvers
A collection of python codes based on numpy and numba that compute the solution to A x =b
cold-spray-macroscopic-simulator
GitHub repository of the work completed during my 6-month internship on modeling and simulating the Cold Spray process.
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
Feature-augmented_Traffic_Attack_Detection_Based_on_UNSW-NB15_Dataset
Feature-augmented Traffic Attack Detection Based on UNSW-NB15 Dataset.
NonuniformFFTs
Yet another package for computing multidimensional non-uniform fast Fourier transforms (NUFFTs) in Julia
repulsor
A package for handling tangent-point energy and other nonlocal energies.
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
anova-with-flexible-emmeans
This Shiny app performs ANOVA (Type I/II/III) and EMMEANS analyses on uploaded Excel data.
bioregion
:package: An R package compiling all steps of a bioregionalization workflow
offenses_data
Demographics and offenses of California's prison population acquired by Redo.io through public records laws
torchsom
TorchSOM is a PyTorch-based library for training Self-Organizing Maps (SOMs), a type of unsupervised learning algorithm used for clustering and dimensionality reduction. Designed for scalability and ease of use, this implementation is optimized for large-scale data.
https://github.com/demianhj/generative-models
Generative Models by Stability AI
hogpp
Fast computation of rectangular histogram of oriented gradients (R-HOG) features using integral histogram
@stdlib/random-streams-randi
Create a readable stream for generating pseudorandom numbers having integer values.
wisio
Analyze, visualize, and understand I/O performance issues in HPC workflows
modalities
Modalities, a PyTorch-native framework for distributed and reproducible foundation model training.
