GitHub
https://github.com/danforthcenter/plantcv-stomata-tutorial-pcv4
Tutorial for analyzing microscopy images of stomata using PlantCV version 4.0
pascal-context
Set of additional annotations for PASCAL VOC 2010. It goes beyond the original PASCAL semantic segmentation task by providing annotations for the whole scene.
fluorescent-neuronal-cells
Fluorescent Neuronal Cells - 283 high-res images of mice brain slices from a fluorescence microscope
AquaFetch
AquaFetch: A Unified Python Interface for Water Resource Dataset Acquisition and Harmonization - Published in JOSS (2025)
MatrixFuns.jl
MatrixFuns.jl: Matrix functions in Julia - Published in JOSS (2025)
sleev
sleev: An R Package for Semiparametric Likelihood Estimation with Errors in Variables - Published in JOSS (2025)
spike
spike: A Tool to Drizzle HST, JWST, and Roman PSFs for Improved Analyses - Published in JOSS (2025)
CoperniFUS
CoperniFUS: A flexible Python-based GUI for stereotaxic Focused UltraSound (FUS) experiment planning - Published in JOSS (2025)
SpecpolFlow
SpecpolFlow: a new software package for spectropolarimetry using Python - Published in JOSS (2025)
pyScienceMode
pyScienceMode: an Open-Source Python Package to control electro-stimulator through the Hasomed’s science mode protocol - Published in JOSS (2025)
tomatod
tomatOD is a dataset for tomato fruit localization and ripening classification
SegregatedVMSSolver.jl
SegregatedVMSSolver.jl: Linearized and Segregated Stabilized Solver for Large Eddy Simulation in Julia - Published in JOSS (2025)
<code>ggret</code>
<code>ggret</code>: An R package for visualising and manipulating tree‑based phylogenetic networks - Published in JOSS (2025)
DiRe - JAX
DiRe - JAX: A JAX based Dimensionality Reduction Algorithm for Large-scale Data - Published in JOSS (2025)
MultiVae
MultiVae: A Python package for Multimodal Variational Autoencoders on Partial Datasets. - Published in JOSS (2025)
OpenTTDLab
OpenTTDLab: A Python framework for reproducible experiments using OpenTTD - Published in JOSS (2025)
PositiveIntegrators.jl
PositiveIntegrators.jl: A Julia library of positivity-preserving time integration methods - Published in JOSS (2025)
plasmodium-falciparum-from-images-of-giemsa
Malaria Segmentation - A dataset for segmentation of malaria infected cells
BenchmarkDataNLP.jl
BenchmarkDataNLP.jl: Synthetic Data Generation for NLP Benchmarking - Published in JOSS (2025)
multi-topography-dataset-for-wind-turbine-detection
Multi-topography dataset for wind turbine detection from remote sensing image
LCOI
LCOI: Local crystalline orientation identifier using mask fitting implemented in MATLAB - Published in JOSS (2025)
ParticleTracking
ParticleTracking: A GUI and library for particle tracking on stereo camera images - Published in JOSS (2025)
SpectriPy
SpectriPy: Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python - Published in JOSS (2025)
msim
Mars Subsurface Ice Model (MSIM): Thermal and Ice Evolution Models for Mars
VoteKit
VoteKit: A Python package for computational social choice research - Published in JOSS (2025)
commensurability
commensurability: a Python package for classifying astronomical orbits based on their toroid volume - Published in JOSS (2025)
clothing-co-parsing
Clothing Co-Parsing by Joint Image Segmentation and Labeling
rubocop-lts-rspec
Meta gem for projects tested with RSpec & linted with rubocop-lts
QGDipoles.jl
QGDipoles.jl: A Julia package for calculating dipolar vortex solutions to the Quasi-Geostrophic equations - Published in JOSS (2025)
remote-sensing-land-cover-dataset
LoveDA: A Remote Sensing Land-Cover Dataset for Domain Adaptive Semantic Segmentation
opencows2020
OpenCows2020: Visual Identification of Individual Holstein Friesian Cattle via Deep Metric Learning
automatic-monitoring-pigs
Automatic Monitoring of Pigs’ Physico-Temporal Activities at Different Greenhouse Gas Concentrations
XCALibre.jl
XCALibre.jl: A Julia XPU unstructured finite volume Computational Fluid Dynamics library - Published in JOSS (2025)
validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools
validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools - Published in JOSS (2025)
npu-bolt
NPU-BOLT - A Dataset for Bolt Object Detection in Natural Scene Images
aircraft_classification
MSc Thesis: Impact of Metadata on Aircraft Classification in Satellite Imagery
annotated-quantitative-phase-microscopy-cell-dataset
Annotated quantitative phase microscopy cell dataset of various adherent cell lines for segmentation purposes
GRBoondi
GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds - Published in JOSS (2024)
dota
DOTA: A Large-Scale Benchmark and Challenges for Object Detection in Aerial Images v2.0
carbonr
carbonr: An R Package for Estimating Carbon-Equivalent Emissions - Published in JOSS (2024)
r_pyrates_practicums
Contains the materials for time series in R for PyRATES workshop
https://github.com/arm-synergy/blimp
Boundary layer properties across heterogeneous landscapes (BLIMP) project repository for the 2025 ARM Summer School
https://github.com/dmey/speedy.f90
An intermediate complexity atmospheric general circulation model
dataset-of-annotated-food-crops-and-weed-images
Dataset of Annotated Food Crops and Weed Images
key4hep-julia-fwk
Demonstrator for high energy physics event-processing application framework in Julia
HeuDiConv — flexible DICOM conversion into structured directory layouts
HeuDiConv — flexible DICOM conversion into structured directory layouts - Published in JOSS (2024)
2025-08-15-osu-online
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
safety-helmet-and-reflective-jacket
Safety Helmet and Reflective Jacket Dataset
