GitHub
multimodal-approach-for-ad
Code for "Automated Detection of Alzheimer’s Disease: A Multi-modal Approach With 3D MRI and Amyloid PET" paper
r-dev-env
A containerised development environment for editing and compiling the R source code.
kinesis
shiny Applications for the tesselle R Packages - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/kinesis
nkpc_estimation
Final Project for 'Effective programming practices for economists' (University of Bonn, winter term 22/23)
rcc.billing
Automated, data-driven service billing implemented on REDCap Custodian
floss-toolbox
A toolbox to help developers and open source referents to not waste their time with manual and boring tasks. Provides simple and light tools to make investigations in source code to look for hot data. Provides also primitives to manage GitHub and GitLab organizations.
gitprojecthealth
A Mining Software Repository and Ticket management Platform tool, in Pharo
https://github.com/lromul/kaggle-planet-amazon
Solution for Kaggle competition "Planet: Understanding the Amazon from Space"
pta-bergsas-presentation
Presentation for BergSAS course: “Digital Methods and Instruments of the ZGAW” (SS 2025)
gnn_tracking
Reconstruct billions of particle trajectories with graph neural networks
propulate
Propulate is an asynchronous population-based optimization algorithm and software package for global optimization and hyperparameter search on high-performance computers.
pricepoints
Price Points research, data analyses, and packages. Informational only, not official Turquoise Health products
training-load-review-data
Systematic review of the training load and injury risk field [dataset]
11521-adv-geo-comp
Syllabus and materials for redesigned 11.521, Advanced Geographic Computation for Urban Planning
2025-06-16-strathclyde
Carpentries website for presentation in SIPBS, June 2025
https://github.com/jageo/tutorialatomate2forcefields
Tutorial to learn basic features of atomate2
theodolite
Theodolite is a framework for benchmarking the horizontal and vertical scalability of cloud-native applications.
exam_forecast
Companion analysis to a paper published in the Journal of Digital Imaging.
openmind
I use a simple model to investigate the epistemic value of open-mindedness. This repository contains the code for a model of the epistemic value of open-mindedness and for producing some figures.
https://github.com/jageo/pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.
architxt
ArchiTXT is an open source Python library that transforms unstructured text into structured, searchable, and AI-ready data. It enables automated database generation and seamless data integration.
https://github.com/ivoschulthess/protonnmr_dressedstates
Repository containing the data and the analysis for the publication of the dressed spin states measurements using the Proton NMR apparatus.
gemelos-digitales-proyecto-final-escalante-21212151-
Proyecto Final: Proceso de inflamación (3 poblaciones)
abc
Code accompanying the publication "Enhancing Bacterial Adhesion with Hydro-Softened Chitosan Films"
fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
electrogenomics-group.github.io
“Electrogenomics” group was established in 2015 by Professors Munroe, Lambiase and Tinker. This is a collaboration between the William Harvey Research Centre at QMUL and UCL’s Institute of Cardiovascular Science. We joined forces in a broad scale attempt to unravel the electrical and genetic causes of cardiovascular mortality.
reproducible-research-with-gpu-jupyter
This repository demonstrates how to use GPU-Jupyter for reproducible deep learning research with minimal setup effort..
sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
replicability-presentation-2022
Presentation on Lessons Learned after 1000 articles
splineomics
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports
crowdtangle-api-schema
Simple ontological representation of the CrowdTangle API to be used in a Tropy template
statrom
Python code to reproduce the results in our reduced order statFEM paper.
https://github.com/jageo/lobsterautomation
This is a package to reproduce the publication on Lobster automation
mbed-torch-fusion-os
MbedTorch FusionOS: Seamlessly merges Mbed OS with Torch ML models for the P-Nucleo-WB55 on Arm Cortex M4. Empowering edge computing with efficient ML deployment.
