mmdetection_test • Rank 7.6 • Science 64%

cutesv • Rank 12.6 • Science 59%

Long read based human genomic structural variation detection with cuteSV

rapidtide • Rank 12.6 • Science 59%

rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data

https://github.com/cheminfo/multiplet-analysis • Rank 12.6 • Science 59%

Analyse multiplet

cartorio • Rank 4.6 • Science 67%

A wrapper on the logging module for Python that provides a simple and easy to use interface for logging.

soccernet-calibration-sportlight • Rank 4.6 • Science 67%

SoccerNet@CVPR | 1st place solution for Camera Calibration Challenge 2023

interactive_data_editor • Rank 4.6 • Science 67%

A Software to interactively edit data in a graphical manner

stringdist • Rank 22.6 • Science 49%

String distance functions for R

scvi-tools • Rank 22.6 • Science 49%

Deep probabilistic analysis of single-cell and spatial omics data

Cylc — Peer-reviewed • Rank 12.6 • Science 59%

Cylc: A Workflow Engine for Cycling Systems - Published in JOSS (2018)

vptstools • Rank 4.6 • Science 67%

Python library to transfer and convert vertical profile time series data

sithom • Rank 7.5 • Science 64%

A package for shared utility scripts.

chess_bead • Rank 4.5 • Science 67%

Package for the both chess and Chinese poetry game. Inspired by Das Glasperlenspiel by Hermann Hesse.

mikrokondo • Rank 4.5 • Science 67%

A simple pipeline for bacterial assembly and quality control

sdds • Rank 12.5 • Science 59%

Python 3 package to handle SDDS files

sasrec.pytorch • Rank 7.5 • Science 64%

PyTorch(1.6+) implementation of https://github.com/kang205/SASRec

bandle • Rank 12.5 • Science 59%

An R package for Bayesian analysis of differential localisation experiments

qtl2 • Rank 12.5 • Science 59%

QTL analysis software for high-dimensional data and complex cross designs

nbproject • Rank 14.5 • Science 57%

Light-weight Jupyter notebook tracker.

coproid • Rank 4.5 • Science 67%

Coprolite host Identification pipeline

ecourts • Rank 4.5 • Science 67%

Python library to help scrape Indian Court Orders from the ecourts website

ccsd • Rank 7.5 • Science 64%

Combinatorial Complex Score-based Diffusion model using stochastic differential equations

TreeSearch • Rank 12.5 • Science 59%

R package for phylogenetic tree search under inapplicable-corrected parsimony and custom optimality criteria

https://github.com/catalyst-cooperative/ferc-xbrl-extractor • Rank 12.5 • Science 59%

A tool for converting FERC filings published in XBRL into SQLite databases

gnina • Rank 12.5 • Science 59%

A deep learning framework for molecular docking

io.joern:c2cpg_2.13 • Rank 17.5 • Science 54%

Open-source code analysis platform for C/C++/Java/Binary/Javascript/Python/Kotlin based on code property graphs. Discord https://discord.gg/vv4MH284Hc

street-network-models • Rank 4.5 • Science 67%

Street network models and indicators for every urban area in the world

pypolyline • Rank 4.5 • Science 67%

Fast Google Polyline encoding and decoding using a Rust binary

metagenomics-analysis • Rank 7.5 • Science 64%

Data Processing and Visualization for Metagenomics

nhdplusTools • Rank 14.4 • Science 57%

See official repository at: https://code.usgs.gov/water/nhdplusTools

anastruct • Rank 17.4 • Science 54%

2D structural analysis in Python

mrvalidation • Rank 4.4 • Science 67%

Package contains routines to prepare data for validation exercises.

dea_limma • Rank 4.4 • Science 67%

A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.

readfish • Rank 12.4 • Science 59%

CLI tool for flexible and fast adaptive sampling on ONT sequencers

tfs-pandas • Rank 12.4 • Science 59%

Python package to handle TFS files

jekyll-pages-novice • Rank 7.4 • Science 64%

Building Websites with Jekyll & GitHub Pages.

loraenergysim • Rank 4.4 • Science 67%

LoRa Network Simulator to Monitor Energy Consumption

perbase • Rank 17.4 • Science 54%

Per-base per-nucleotide depth analysis

dla-future-fortran • Rank 4.4 • Science 67%

Fortran interface for DLA-Future

https://github.com/sktime/pytorch-forecasting • Rank 25.4 • Science 46%

Time series forecasting with PyTorch

grass • Rank 12.4 • Science 59%

GRASS - free and open-source geospatial processing engine

aggregate • Rank 12.4 • Science 59%

Tools for creating and working with aggregate probability distributions.

who-owns-mass-processing • Rank 4.4 • Science 67%

Deduplicates property owners in Massachusetts using the MassGIS standardized assessors' parcel dataset and the OpenCorporates Bulk Data product.

Delira — Peer-reviewed • Rank 12.4 • Science 59%

Delira: A High-Level Framework for Deep Learning in Medical Image Analysis - Published in JOSS (2019)

tango • Rank 17.4 • Science 54%

Organize your experiments into discrete steps that can be cached and reused throughout the lifetime of your research project.

https://github.com/epistasislab/tpot2 • Rank 12.4 • Science 59%

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

huspacy • Rank 7.3 • Science 64%

HuSpaCy: industrial-strength Hungarian natural language processing

symbolicai • Rank 17.3 • Science 54%

A neurosymbolic perspective on LLMs

exllsm-circuit-reconstruction • Rank 4.3 • Science 67%

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

pointedsdms • Rank 12.3 • Science 59%

Wrapper function for 'inlabru' for modeling species distribution models from disparate datasets.

NbodyGradient • Rank 7.3 • Science 64%

N-body integrator computes derivatives with respect to initial conditions for TTVs, RV, Photodynamics & more

mllmcelltype • Rank 12.3 • Science 59%

🏆 #1 Multi-LLM consensus framework | 550+ stars | 95% accuracy | 10+ LLM providers | Leading cell annotation tool

giscoR • Rank 14.3 • Science 57%

Download geospatial data from GISCO API - Eurostat

pennylane • Rank 25.3 • Science 46%

PennyLane is a cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Built by researchers, for research.

exactextract • Rank 17.3 • Science 54%

Fast and accurate raster zonal statistics

vegas • Rank 12.3 • Science 59%

Adaptive multidimensional Monte Carlo integration.

flitc-application • Rank 4.3 • Science 67%

A data-driven deep learning based fault diagnosis application for radial, active distribution grids

pyelli • Rank 12.3 • Science 59%

An open source ellipsometry analysis tool for reproducible and comprehensible building of optical models.

pyscreener — Peer-reviewed • Rank 12.3 • Science 59%

pyscreener: A Python Wrapper for Computational Docking Software - Published in JOSS (2022)

powergenome • Rank 12.3 • Science 59%

A tool to quickly and easily create inputs for power systems models

ER-Evaluation — Peer-reviewed • Rank 4.2 • Science 67%

ER-Evaluation: End-to-End Evaluation of Entity Resolution Systems - Published in JOSS (2023)

mmsbm • Rank 4.2 • Science 67%

Mixed Membership Stochastic Block Models

skosprovider_rdf • Rank 4.2 • Science 67%

Skosprovider implementation backed by RDF

moire-lattice-generator • Rank 4.2 • Science 67%

Simple python code to interactively generate visualizations of moire patterns of hexagonal lattices such as magic angle bilayer graphene.

abmgpu • Rank 4.2 • Science 67%

Agent Based Model on GPU using CUDA 12.2.1 and OpenGL 4.5 (CUDA OpenGL interop) on Windows/Linux

blackmarblepy • Rank 12.2 • Science 59%

Georeferenced Rasters and Statistics of Nightlights from NASA Black Marble

check-shapes • Rank 17.2 • Science 54%

Library for annotating and checking tensor shapes.

fitlins • Rank 12.2 • Science 59%

Fit Linear Models to BIDS Datasets

resample • Rank 7.2 • Science 64%

Randomization-based inference in Python

scout-browser • Rank 17.2 • Science 54%

VCF visualization interface

ckanext-graph • Rank 9.2 • Science 62%

A CKAN extension that adds a graph view for resources.

lst-bench • Rank 7.2 • Science 64%

LST-Bench is a framework that allows users to run benchmarks specifically designed for evaluating Log-Structured Tables (LSTs) such as Delta Lake, Apache Hudi, and Apache Iceberg.

lrebench • Rank 4.2 • Science 67%

[EMNLP 2022 Findings] Towards Realistic Low-resource Relation Extraction: A Benchmark with Empirical Baseline Study

span-marker • Rank 17.2 • Science 54%

SpanMarker for Named Entity Recognition

python-ternary • Rank 20.2 • Science 51%

:small_red_triangle: Ternary plotting library for python with matplotlib

org.bridgedb.examples • Rank 12.2 • Science 59%

The BridgeDb Library source code

jax • Rank 17.2 • Science 54%

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

konstraints • Rank 4.2 • Science 67%

gemma.R • Rank 14.2 • Science 57%

An R wrapper for the Gemma RESTful API

puniform • Rank 12.2 • Science 59%

https://github.com/astro-informatics/s2let • Rank 12.2 • Science 59%

Fast wavelet transforms on the sphere.

python-ecology-lesson-es • Rank 7.2 • Science 64%

Análisis y visualización de datos usando Python

gtsummary • Rank 22.2 • Science 49%

Presentation-Ready Data Summary and Analytic Result Tables

oil-riggery_yolov5 • Rank 7.2 • Science 64%

dantro • Rank 4.2 • Science 67%

dantro is a Python package to handle, transform, and visualize hierarchically structured data. Docs @ https://dantro.readthedocs.io — NOTE: This repository is a READ-ONLY-MIRROR of the actual development repository; for open issues and MRs, see there:

wombat • Rank 14.2 • Science 57%

Windfarm Operations & Maintenance cost-Benefit Analysis Tool

arbor • Rank 17.2 • Science 54%

The Arbor multi-compartment neural network simulation library.

cccl • Rank 17.2 • Science 54%

CUDA Core Compute Libraries

simpleworkflows.jl • Rank 4.1 • Science 67%

A simple workflow engine powered by Julia

papaja • Rank 17.1 • Science 54%

papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

epialleleR • Rank 12.1 • Science 59%

Fast, epiallele-aware methylation caller and reporter — an R/Bioconductor package

de.lmu.ifi.dbs.elki • Rank 17.1 • Science 54%

ELKI Data Mining Toolkit

rsatoolbox • Rank 17.1 • Science 54%

Python library for Representational Similarity Analysis

rcarb • Rank 12.1 • Science 59%

R package 'RCarb'

instrain • Rank 12.1 • Science 59%

Bioinformatics program inStrain

alfred-bibtex-citation-picker • Rank 7.1 • Science 64%

Picker for markdown-based citations and lightweight reference manager for BibTeX libraries.

covid-19-todesfaelle_in_deutschland • Rank 4.1 • Science 67%

Im Datensatz 'COVID-19-Todesfälle in Deutschland' werden die Todesfälle in Bezug auf COVID-19 in Deutschland bereitgestellt. Darüber hinaus wird neben der Anzahl der übermittelten Todesfälle der Fall-Verstorbenen-Anteil berechnet. Angaben zum Tod zählen zu den melde- und übermittlungspflichtigen Inhalten. Bei der Ermittlung von Todesfällen und d...

opensimplex-loops • Rank 4.1 • Science 67%

Python library to generate seamlessly-looping animated images and closed curves, and seamlessy-tileable images. Based on 4D OpenSimplex noise.

@stdlib/random-iter-mt19937 • Rank 4.1 • Science 67%

Create an iterator for a 32-bit Mersenne Twister pseudorandom number generator.

parag • Rank 4.1 • Science 67%

parag🎆Interactive visualization of higher-order graphs in Python