pooledpeaks — Peer-reviewed • Science 93%

pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples - Published in JOSS (2025)

ParquetDB — Peer-reviewed • Science 93%

ParquetDB: A Lightweight Python Parquet-Based Database - Published in JOSS (2025)

AutoEIS — Peer-reviewed • Science 98%

AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)

champagne • Science 67%

CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

PathSim - A System Simulation Framework — Peer-reviewed • Science 98%

PathSim - A System Simulation Framework - Published in JOSS (2025)

BESMARTS — Peer-reviewed • Science 93%

BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)

EXP — Peer-reviewed • Science 98%

EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)

Minterpy — Peer-reviewed • Science 93%

Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments — Peer-reviewed • Science 67%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

DIFFICE-jax — Peer-reviewed • Science 93%

DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)

pengWann — Peer-reviewed • Science 98%

pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)

Pydre — Peer-reviewed • Science 100%

Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)

https://github.com/dptech-corp/uni-fold • Science 36%

An open-source platform for developing protein models beyond AlphaFold.

OPTIMUS — Peer-reviewed • Science 93%

OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)

ReadmeReady — Peer-reviewed • Science 93%

ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)

cafe • Science 49%

Knowledge Graph Completion using Neighborhood-Aware Features (published in EAAI)

@stdlib/array-from-scalar • Science 44%

Create a single-element array containing a provided scalar value.

rjaf — Peer-reviewed • Science 95%

rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)

osipp • Science 54%

An OpenFOAM's post-processing for oscillatory shear index.

yolov5 • Science 54%

LongMemory.jl — Peer-reviewed • Science 100%

LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)

https://github.com/dptech-corp/uni-core • Science 26%

an efficient distributed PyTorch framework

epidemic-simulator • Science 44%

A computer model that simulates a SIR epidemic model with a quarantine option in a dynamic network.

https://github.com/google-research/foundation-model-embedded-3dgs • Science 36%

QuantumACES.jl — Peer-reviewed • Science 98%

QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)

gpt • Science 44%

libsodium • Science 44%

The Sodium crypto library (libsodium)

mrlats • Science 44%

Meandering River Length and Time Scales

hela • Science 54%

elasticnet • Science 67%

Predict the mechanical properties of multi-component transition metal carbides (MTMCs)

sw_clip • Science 49%

https://github.com/dptech-corp/material-compute-agent • Science 26%

DemeterWatch — Peer-reviewed • Science 95%

DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)

litre • Science 44%

LITRE: Layer and Interface Trackers for Radar Echograms

dye_assay • Science 44%

Image analysis of acid fuchsin presence in fruit

face-mask-detection-application • Science 49%

https://github.com/dptech-corp/nag2g • Science 49%

https://github.com/dptech-corp/uni-dock-benchmarks • Science 49%

Uni-Dock-Benchmarks contains a curated collection of datasets and benchmarking tests for evaluating the performance and accuracy of the Uni-Dock docking system. This repository is intended for use in continuous integration testing and for researchers seeking to compare docking results with established benchmarks.

grader • Science 44%

helps grade R script assignment submissions!

https://github.com/google-research/mozolm • Science 39%

MozoLM: A language model (LM) serving library

sexond • Science 54%

https://github.com/dptech-corp/uni-dock • Science 36%

Uni-Dock: a GPU-accelerated molecular docking program

cotede-modified • Science 49%

notes-on-quantum • Science 44%

maestro-x • Science 49%

Automating UAV-Relay Swarms

2022-vinci-dosdall-learn2tap-code • Science 52%

This is the source code of the learning application which was used for the user study in the VINCI 2022 Paper Toward In-Situ Authoring of Situated Visualization with Chorded Keyboards

applied-probability • Science 44%

This is my research about applied probability.

COHESIVM — Peer-reviewed • Science 98%

COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)

transformers • Science 49%

privategpt • Science 44%

package-aigeanpy • Science 44%

Collaborative Python package to find water level changes via satellite imagery

gpt- • Science 54%

ScatteringOptics.jl — Peer-reviewed • Science 95%

ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)

https://github.com/dptech-corp/ui-component-mcp-server-demo • Science 26%

UI compnent as MCP server

clean_with_moses • Science 44%

Clean parallel corpus with moses.

libmicrofido2 • Science 44%

Minimal FIDO2 library for microcontrollers

swin-att • Science 44%

netflowlabeler • Science 44%

A configurable rule-based labeling tool for network flow files.

@stdlib/array-base-at • Science 44%

Return an element from an array.

Fronts • Science 44%

Nonlinear diffusion problems in Julia

@stdlib/math-base-special-nanmax • Science 44%

Return the maximum value, ignoring NaN.

https://github.com/dptech-corp/dflow • Science 36%

reactive-mise-en-scene • Science 67%

Unity plugin using on-screen object position as proxy for player attention. Objects are assigned a "tendency" which, together with attention measurements, enables custom loading of prefabs to adapt narrative environments over time.

master_thesis • Science 54%

https://github.com/dptech-corp/uni-fep-benchmarks • Science 26%

Uni-FEP-Benchmarks is a benchmark dataset designed to systematically evaluate Uni-FEP.

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks — Peer-reviewed • Science 96%

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks - Published in JOSS (2024)

nf-core-saliva • Science 57%

ssdf-nncore • Science 44%

nncore is a pytorch framework focusing on solving autonomous-driving problems.

https://github.com/dptech-corp/deepmd-pytorch • Science 13%

Deprecation - migrated to DeePMD-kit

cnpypp • Science 57%

Fork of https://gitlab.iap.kit.edu/mreininghaus/cnpypp.git

bme-rmb-pgm • Science 54%

Code files required to produce data for figures in "Haar-random and pretty good measurements for Bayesian state estimation"

disfuse-fors-analasis-functions • Science 44%

Python Module Created for My Masters in Physics Project in Diffuse Fibre Optic Reflectence Spectral Analysis

visitorcount • Science 54%

Visitor Count on kevyt kamerakuvan tunnistukseen perustuva kävijälaskuri esimerkiksi turistikohteille

FWCS • Science 44%

This is the software of the Filter Wheel Control System (FWCS) of the Pico dos Dias Observatory

traffic_assignment • Science 54%

User equilibrium traffic assignment and models for scheduling road upgrades

https://github.com/google-research/cross-replication-reliability • Science 39%

ptmtorrent • Science 57%

Code to generate the PTMTorrent dataset

bs_assign • Science 54%

Find groups of motifs around genomic landmarks of interest

https://github.com/erictleung/coursework • Science 10%

:notebook: Coursework for miscellaneous programming, web development, etc courses

dummydatarepo • Science 67%

https://github.com/dptech-corp/uni-lab-os • Science 26%

A Platform for Laboratory Automation.

noisy_od_m2x • Science 54%

https://github.com/google-research/libsoftwaresync • Science 10%

:camera: :camera: :camera: :camera: :camera: Wireless software synchronization of multiple distributed smartphone cameras.

https://github.com/dptech-corp/uni-dock2 • Science 26%

GPU-accelerated molecular docking software: Uni-Dock 2

heritage-at-risk • Science 49%

A peripleo instance to demonstrate mapping of Historic England's Heritage at Risk register (open data)

ElasticFDSG • Science 67%

asrt_jspsych • Science 67%

A self-paced Alternating Serial Reaction Time Task (ASRT) created with jsPSych.

https://github.com/erictleung/freecodecamp-news-analysis • Science 10%

:office: Code and notes on running various database management systems

https://github.com/dptam/pytorchdiscreteflows • Science 10%

Discrete Normalizing Flows implemented in PyTorch

hn2021-boccace • Science 49%

This repository hosts all the documents, including transcriptions, bibliographical references and introduction that serve the team Boccace for the validation of the course "Bonnes pratiques du developpement collaboratif : initiation à Git" (prof. Thibault Clérice), of the first semester - Master Humanités Numériques ENC-PSL 2021-2022.

stable_diffusion_can_use • Science 54%

sd 包含control_net 和 reactor（不確定能不能行）

ambiguous-resonances-dataset • Science 67%

uniswap_amm • Science 44%

lennardjonesfluidlab • Science 54%

Lennard-Jones fluid simulation code in Python with a Jupyter-based lab activity for students

Biosensor Framework — Peer-reviewed • Science 100%

Biosensor Framework: A C# Library for Affective Computing - Published in JOSS (2021)

sql-database • Science 44%

SQL databases in Python, designed for simplicity, compatibility, and robustness

isingchat • Science 44%

A library to calculate the thermodynamic properties of a 1D Ising spin chain with beyond nearest-neighbor interactions.

simple-store-project • Science 44%

Projeto educacional produzido em grupo de um Marketplace

initable • Science 44%

An automatic object initializer.

python-intermediate-inflammation • Science 44%