GitHub
sat-ds
The official repository to build SAT-DS, a medical data collection of over 72 public segmentation datasets, contains over 22K 3D images, 302K segmentation masks and 497 classes from 3 different modalities (MRI, CT, PET) and 8 human body regions.
appeears-data-resources
This repository provides resources and tutorials to help users work with AppEEARS programmatically.
demgen
This code aims to achieve a standardized particle packing generation framework for granular materials.
pyeugene
Simple python version of EUGEN program, as described by Izgorodina et al (DOI: 10.1021/cg900656z)
happypose
Toolbox and trackers for object pose-estimation. Based on the work CosyPose and MegaPose
https://github.com/biomeds/python_course_ws24
Programming with Python course for master biosciences at the University of Würzburg (winter semester 24/25)
pace_oci_l2_to_l3
Tutorial for using NASA's SeaDAS to convert PACE OCI L2 surface reflectance to L3 data
traitblender
Blender addon for simulating raw datasets under known evolutionary models
java-vulnerability-patch-retriever
Sistema de recuperación semántica para sugerir commits de parche de vulnerabilidades en Java. Combina BM25 y Sentence Transformers para encontrar soluciones relevantes, evaluadas con métricas estándar. Basado en el dataset curado de TUHH-SoftSec.
https://github.com/dimits-ts/quantitative-finance
Scripts for option pricing (European/American) and FX arbitrage opportunities.
mapping-thonet
„Mapping Thonet“ is the new visual processing of the image research of the master thesis "Das öffentliche Bild des Thonet/The public image of Thonet". In a earlier stage selected photographic image contents of the research were territorially located in a historical map. The project was funded by the NEUSTART KULTUR in 2021
presentation-fowita23
Integration von ALS-Daten für ein verbessertes Waldschadensmonitoring
template-metadata-files
Collection of metadata files (gitignore, pyproject, editorconfig, license etc.) to be used for initializing workflow and project repositories
crns_footprint_gui
GUI for calculating CRNS footprint and Signal contributions
https://github.com/dimits-ts/deliberate-lab-utils
Local LLM server and automation scripts for Google's deliberate lab development
minimal-gross
SageMath implementation of the algorithms and results of the computations described in the paper "Gross lattices of supersingular elliptic curves."
docker-singularity-hats
Introduction to using Docker and Singularity containers in CMS(SW)
dev.dsf:dsf-bpe-pom
A distributed process engine based on the BPMN 2.0 and FHIR R4 standards
mde-presentation-egu2023
Presentation on the Model Data Explorer at EGU 2023 in Vienna
commonsensevision
Open-world object detection using YOLOv8 + CLIP + LLaVA + GPT-based trait reasoning to detect objects based on intent and scene context.
ml-lifecycle-visualization
Machine learning lifecycle visualization providing a checklist for steps necessary in a machine learning project
voice-based-emotion-recognition-using-ai-and-speech-processing
A deep learning project that detects human emotions from audio using MFCC feature extraction and a neural network classifier. Built using Python and TensorFlow, this tool leverages speech signal processing to predict emotions like happy, angry, or sad, helping machines better understand human sentiment.
stringerrunouttopopt
Code and results for the manuscript "Topology optimisation methodology for robust design of large composite structures"
dh_yvonne_n
An incomplete collection of Christopher Moore books, from my own library.
optitrack_broadcast
(FSC lab) calculate rigid-body velocity based on position stream from vrpn
candipore
Candida auris Variant calling workflow for both long and short reads (+parabricks)
gov.nasa.pds:mi-label
Metadata Injector for PDS Labels (MILabel) provides a command-line interface for generating PDS4 Labels using a user provided PDS4 XML template and input (source) data products.
rad_assembler
Nextflow pipeline for Reference Assisted De novo assembling whole genome shotgun sequenced viruses.
noveltree
NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, species trees, and gene family evolutionary history.
ldtr
R package to implement the Landscape Dynamic Typology (LDT) method developed by Machado et al. 2018. The main purpose is to assess land use / land cover changes between several moments.
https://github.com/dincalcilab/nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
https://github.com/dincalcilab/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
awesome-engineer-design
A curated list of awesome engineer design papers, including airfoil design, 3D print, CAD design
https://github.com/dincalcilab/checkqc
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
pairgenomealign_windowmask
New genome masking pipeline of pairwise genome alignment
assignments-3-and-later-zaransage
assignments-3-and-later-zaransage created by GitHub Classroom
mysql-mcp-server
A comprehensive Model Context Protocol (MCP) server for MySQL databases with 200+ tools for advanced database management, diagnostics, performance analysis, security auditing, and AI-powered database interactions.
https://github.com/dincalcilab/samurai-test-data
Public data files for SAMURAI tests
2025-05-19-tudelft
SWC repository. Location: University of Twente .Date: May 19-22, 2025
twinpals-modul-1
A custom made Geant4 simulation for a Positron Annihilation Lifetime Spectroscopy to generate data streams with individual event information.
nonnewtoflows
An open-source MATLAB code to analyse non-Newtonian inelastic fluids flowing in slightly tapered axisymmetric pipes.