GitHub
https://github.com/dhruvvkdv/amplify-vite-react-template
My Amplify Gen 2 starter application
https://github.com/dhruvvkdv/shortest-path-grocery-store
Shortest Path Grocery Store
permutools
A MATLAB package for multivariate permutation testing and effect size measurement
https://github.com/dhschall/repo-statistics
Helper repository to collect statistics from different repostories
queerganteanga_data_and_analysis
Datasets and analysis utilities to support research connected to the 'Queer Gan Teanga' paper
https://github.com/dhschall/ubench
Suite of microbenchmarks to test microarchitectural components in gem5
https://github.com/dhschall/gem5-svr-bench
A framework to run various server workloads on gem5
https://github.com/dhschall/bibutil
Utility tool to download bib references from DBLP
numerical_cv_sim_1d_diffusion
matlab code developed to simulate cyclic voltammetry for thin-film ion insertion electrodes. Code assumes 1D geometry and no resistance.
https://github.com/crowdstrike/foundry-sample-servicenow-idp
ServiceNow CMDB Ingest For Identity Protection sample Foundry app
lang-tlh
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Klingon language
plf-es-2023-1-ti2-0924100-skanboo
plf-es-2023-1-ti2-0924100-skanboo created by GitHub Classroom
https://github.com/giorgiaauroraadorni/gansformer
Generative Adversarial Transformers
https://github.com/dhschall/binary-neural-networks
Exploring "Binary Neural Networks" (https://arxiv.org/abs/1602.02830) in Theano. A set of experiments that use binarised weights and/or activations to reduce computational load of convolutional neural networks.
https://github.com/dhslab/dhslab-docker-images
Docker images for the Spencer lab
https://github.com/dhslab/covfast
Small c program to calculate coverage from a bam/cram over bed intervals
https://github.com/dhslab/epibench
EpiBench is a software tool designed for predicting DNA methylation levels using genomic sequence data and histone modification marks. It employs a multi-branch CNN architecture tailored for integrating these data types to achieve high prediction accuracy.
https://github.com/dhslab/peakachu-cohort
Wraps Peakachu’s train and score_genome functions in a parallelized CLI subcommand enabling scalable analysis across cohorts without manual per-sample commands.
https://github.com/dhslab/methfast
Simple c program for manipulating bed-like methylation files
https://github.com/dhslab/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
pbe-si-2025-1-p5-tias-7375100-2025-1-p5-tias-template-tias
pbe-si-2025-1-p5-tias-7375100-2025-1-p5-tias-Template-TIAS created by GitHub Classroom
https://github.com/alberto-santini/kpgf
The 0-1 Knapsack Problem with Group Fairness
https://github.com/alcrene/emdcmp
Original implementation of the EMD (empirical model discrepancy) model comparison criterion
https://github.com/alexandrovlab/sigprofilersimulator
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
https://github.com/algebraicjulia/decapodes.jl
A framework for composing and simulating multiphysics systems
https://github.com/algebraicjulia/acsets.jl
ACSets: Algebraic databases as in-memory data structures
https://github.com/aliireza/slice-aware
Slice-aware Memory Management - Exploiting NUCA Characteristic of LLC in Intel Processors
https://github.com/alleninstitute/patchseq_human_l1
supporting data and code for human L1 patchSeq manuscript
https://github.com/allfed/allfed-repository-template
Use this as a template for a new project: https://medium.com/programming-lite/repository-templates-in-github-why-how-75b1d1bd43f2
https://github.com/allfed/water-access
Global analysis of freshwater access by walking or cycling in the event of catastrophic infrastructure loss.
https://github.com/aloftdata/bird-migration-flow-visualization
Bird migration flow visualization
https://github.com/alondmnt/joplin-plugin-tag-navigator
A PKM system to organise, search, browse and convert inline tags, front matter and tasks in Joplin
https://github.com/amazon-science/job-posting-structure
Extract structured information from job postings.
https://github.com/amazon-science/wqa-multi-sentence-inference
This repository contains code used for our Multi Sentence Inference NAACL'22 paper.
https://github.com/amazon-science/recode
Releasing code for "ReCode: Robustness Evaluation of Code Generation Models"
https://github.com/amazon-science/latticealgorithms.jl
Algorithms to solve lattice problems in Julia
https://github.com/amber-md/cpptraj
Biomolecular simulation trajectory/data analysis.
https://github.com/amider-dev/exceltoxml
エクセルで入力されたツリー構造のデータをスキーマに従ってXMLファイルへ変換する。共通・非共通項目を持つ複数のXMLファイルを一括生成できる。Convert tree-structured datasets described in Excel table into multiple XML files following the schema.
https://github.com/amoneva/code_papers
A repository of R code used for analysis in scientific papers.
https://github.com/ampliconsuite/ec3d
Reconstruct the three-dimensional structure of extrachromosomal DNA
https://github.com/amrex-combustion/pelec
An AMR code for compressible reacting flow simulations
https://github.com/amrex-combustion/pelephysics
A collection of physics databases and implementation code for use with the Pele suite of of codes
https://github.com/anastassiavybornova/schelling-reloaded
Background material for the project "You Don't Have to Live Next to Me: A Critical Review of the Schelling Model and Its Reception"
https://github.com/andresgur/muse_project
Scripts to deal with some subtleties regarding MUSE data
https://github.com/anikfal/atmospheric_science
Codes and solutions for atmospheric data and modeling
https://github.com/anselmoo/useful-optimizer
A dedicated set of optimization algorithms for numeric problems.
https://github.com/anton-bushuiev/proteinttt
Training on test proteins improves fitness, structure, and function prediction
https://github.com/antsx/antsrnet
Medical image analysis framework merging ANTsR and deep learning
https://github.com/ap6yc/audeyart
Learning repo for Audrey and writing FuzzyART from scratch.
https://github.com/ap6yc/cfar
This repository is a workplace for the upcoming "Analysis of Catastrophic Forgetting and Adaptive Resonance Theory Algorithms" paper.
https://github.com/appfl/appfl-scifm
APPFL Demo for Federated Learning Tutorial at SciFM
https://github.com/aradfarahani/awesome-geophysics
Awesome Geophysics is a community-curated resource offering essential tools, datasets, and educational materials for geophysical exploration. It’s designed to empower students, researchers, and professionals to analyze data, model Earth processes, and stay connected with the latest industry trends.
https://github.com/aria-systems-group/sym_quant_reactive_synth
Symbolic Regret synthesis and graph search
https://github.com/arkadiusz-jedrzejewski/norm-formation-m
Matlab scripts used to analyze an agent-based model (ABM) used to study the impact of symmetric and nonsymmetric conformity functions on decision-making processes.
https://github.com/arkokupski-wat/hypothesis-of-cyclic-black-hole-eruptions-in-higher-dimensional-geometry
Unified Cyclic Black Hole Eruption Hypothesis: Proposes that extreme densities trigger matter-antimatter conversion, powering cosmic explosions via temporary event horizon loss. Emergent gravity arises from 5D spacetime tension between matter/antimatter branes. Predicts unique gamma-ray profiles and eruption cyclicity (T ∼ M/Ṁ).
https://github.com/arkokupski-wat/hypothesis-of-emergent-gravity-from-substrate-phase
The Emergent Gravity from Substrate Phase Hypothesis Core Idea: This hypothesis proposes that spacetime and matter are not fundamental but represent different phase states of a single, underlying entity—the Substrate.
https://github.com/arkokupski-wat/big-bang-as-a-detonation-explosive-material
The core mechanism is matter-antimatter annihilation, which acts as the engine of the cosmos. However, the model posits that annihilation does more than just release energy in the form of photons; it is the primary process responsible for generating spacetime itself and endowing it with an expansive property.
https://github.com/arkokupski-wat/asymmetric-spacetime-disk
A 5D geometric model unifying dark energy and matter-antimatter asymmetry. Predicts Hubble constant H 0 ≈ 67 H 0 ≈67 km/s/Mpc without dark energy
https://github.com/arkokupski-wat/g-2-force-spacetime-adhesion-revised-model-
Revised model of G-2 force.
https://github.com/arkokupski-wat/g-2-force-spacetime-adhesion-model-revised-
G-2-Force-Spacetime-Adhesion Model (Revised). The theory introduces: New "adhesion parameter" D quantifying spacetime coupling
https://github.com/arm61/sim_vs_trad
ESI for "Assessing molecular simulation for the analysis of lipid monolayer reflectometry"
https://github.com/arya-gaj/your-phone-can-spot-fashion-v1
A lightweight yet powerful system that analyzes short-form videos in real time to identify fashion products by combining computer vision and natural language processing, all processed locally.