GitHub
https://github.com/giorginolab/polychrom
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
quantum-cryptography
Experimental data and code from the semester 5 laboratory
https://github.com/giorginolab/evobind
In silico directed evolution of peptide binders with AlphaFold
https://github.com/giorginolab/vmd_rmsdttnc
RMSD trajectory tool enhanced with native contacts
ni-chaos
Data and Matlab code to reproduce "Noise-induced chaos: A conditioned random dynamics perspective"
model-selection-sim-study
Simulation study of various variable selection techniques. Intended to examine the bias in parameter estimation in the context of causal health. In particular, we grapple with confounding, unseen confounding and bias amplification.
gs-svocc
Fit single visit occupancy models to data from camera trap and walking transects in the Gran Sabana, Venezuela
df-dn-paper
Conceptual & empirical comparisons between decision forests & deep networks
https://github.com/diging/spring-examples
A project to demonstrate simple workflows, etc.
empire-analysis
A sustainable literature review for analyzing the state and evolution of empirical research in requirements engineering using KG-EmpiRE.
https://github.com/diging/webapp-tomcat8-spring-security-archetype
A Maven archetype to create a Spring Security/MVC project for Tomcat 8
cmac
A core C++ implementation of the Cerebellar Model Articulation Controller (CMAC) with APIs in various languages. This artificial neural network is designed to be used in control system applications.
https://github.com/diging/vm-dockerfiles
A repository for dockerfiles used to setup our VMs
https://github.com/diging/tethne-services
Tools to enhance metadata-based analysis in Tethne.
https://github.com/diging/mbl-browser
Curation platform and API for the MBL course and investigator dataset
https://github.com/diging/django-pg-fts
Implementation PostgeSQL for Full Text Search for Django >= 1.7
https://github.com/digital-botanical-gardens-initiative/taxonomical-utils
A set of Python scripts to proceed to taxonomical resolution and retrieval of upper taxonomies.
geocovid_bsas
Website con reportes que recopilan el procesamiento de los datos de COVID-19, movilidad ciudadana, mapas vectoriales e imágenes raster para provincia de Buenos Aires creados para la aplicación GeoCovid app Buenos Aires.
project-classify-fish-sounds
An archive repo with collection of data, scripts, notebooks, and a model to detect fish sounds from spectrograms.
neteasecrowd-dataset
NetEaseCrowd dataset, a collection of data obtained from You Ling crowdsourcing platform, Fuxi AI Lab, NetEase.
denspp.offline
End-to-End Software Framework for Emulating Signal Processing Pipelines
https://github.com/digital-botanical-gardens-initiative/directus-dev
The EMI directus dev instance
https://github.com/digital-botanical-gardens-initiative/directus-prod
The EMI directus production instance
covid19-ace2-variants
Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infection
bilevelbenchmark.jl
Benchmark of Biobjective Optimization problems in a BBO context
https://github.com/digital-botanical-gardens-initiative/emi-trydb-globi
Repo for reproducing knowledge graph
https://github.com/digital-botanical-gardens-initiative/dbgi-ro-crate
Sandbox for RO Crate
https://github.com/digital-botanical-gardens-initiative/directus-db
The Directus self hosting scripts
https://github.com/digital-botanical-gardens-initiative/directus-backup
Backup scripts for directus
https://github.com/digital-botanical-gardens-initiative/nextcloud
Creates a docker container for the EMI project
