GitHub
https://github.com/broadinstitute/regional_missense_constraint
Code to calculate regional missense constraint
org-website
This is the lab-website-template based website for the Lücken lab at the Computational Health Center at Helmholtz Munich.
inverseproblemsolvers
A collection of python codes based on numpy and numba that compute the solution to A x =b
cold-spray-macroscopic-simulator
GitHub repository of the work completed during my 6-month internship on modeling and simulating the Cold Spray process.
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
Feature-augmented_Traffic_Attack_Detection_Based_on_UNSW-NB15_Dataset
Feature-augmented Traffic Attack Detection Based on UNSW-NB15 Dataset.
NonuniformFFTs
Yet another package for computing multidimensional non-uniform fast Fourier transforms (NUFFTs) in Julia
repulsor
A package for handling tangent-point energy and other nonlocal energies.
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
anova-with-flexible-emmeans
This Shiny app performs ANOVA (Type I/II/III) and EMMEANS analyses on uploaded Excel data.
bioregion
:package: An R package compiling all steps of a bioregionalization workflow
offenses_data
Demographics and offenses of California's prison population acquired by Redo.io through public records laws
torchsom
TorchSOM is a PyTorch-based library for training Self-Organizing Maps (SOMs), a type of unsupervised learning algorithm used for clustering and dimensionality reduction. Designed for scalability and ease of use, this implementation is optimized for large-scale data.
https://github.com/demianhj/generative-models
Generative Models by Stability AI
hogpp
Fast computation of rectangular histogram of oriented gradients (R-HOG) features using integral histogram
@stdlib/random-streams-randi
Create a readable stream for generating pseudorandom numbers having integer values.
wisio
Analyze, visualize, and understand I/O performance issues in HPC workflows
modalities
Modalities, a PyTorch-native framework for distributed and reproducible foundation model training.
verlab-segmentation
This method introduces a novel methodology for the partitioning of the social space associated with arbitrary groups of individuals into approachable regions.
facts
Repository for the article in the online magazine Data Science Collective.
https://github.com/demichie/peaklocator_1.0
web application to analyze and compare spatial grid files
eisca
A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
avdeepfake1m
[ACM MM Award] AV-Deepfake1M: A Large-Scale LLM-Driven Audio-Visual Deepfake Dataset
https://github.com/demichie/nlerosion
2D numerical model for the temporal evolution of simple landforms such as cinder cones by nonlinear diffusive processes
frugally-deep
A lightweight header-only library for using Keras (TensorFlow) models in C++.
elfen
A python package to efficiently extract linguistic features for text/NLP datasets
sefo
An Octave package for generating probabilistic forecasts of weather quantities
lang-gle
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Irish language
maxfitstoolkit
This collection of Windows command-line utilities is designed for manipulating FITS files, primarily to streamline photometry data reduction with IRIS, a free astronomical image processing software. Currently, the package assists in building calibration master frames and preparing calibrated science images for photometry in AstroImageJ.
metrx
A library containing a collection of distance and similarity measures for data analysis
blas-base-matrix-orientation-str2enum
Return the enumeration constant associated with a matrix orientation.
de-aop-23
Data & R code for the paper: "Apnea of Prematurity induces short and long-term development-related transcriptional changes in the murine cerebellum"
reefnet-pytorch-models
This repository provides modular, split-aware PyTorch Dataset classes used in the ReefNet project for coral reef image classification. Designed to integrate with timm, it supports large-scale genus-level training and evaluation on Red Sea-specific benchmarks.
learnmcp-xapi
An open-source MCP (Model Context Protocol) server that enables AI agents to record and retrieve learning activities through xAPI-compliant Learning Record Stores
hourvideo
[NeurIPS 2024] Official code for HourVideo: 1-Hour Video Language Understanding
oceananalyticslab
Experimentation and development of production frameworks for Ocean Science algorithms
sanivult
Evaluating the impacts of the outbreak of a Bovine Spongiform Encephalopathy epidemic on the demographic and population dynamics of one of the world's largest colonies of the Eurasian Griffon vulture (Gyps fulvus).
pytorch-deformable-convolution-v2
Don't feel pain to use Deformable Convolution
geonames-lookup
A small Python Flask application that looks up geoname data from a local MySQL database
phasetracer
PhaseTracer is a C++14 software package for tracing cosmological phases, finding potential phase transitions, computing the bounce action, and plotting the gravitational wave spectrum for Standard Model extensions with any number of scalar fields
pypsa-eur
PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
sam-clai
This is a repository for training and using the Segment Anything Model 2 for 3D images of granular materials.
