GitHub
discovering_ccm
abundance_harvestedpops
Code and data for: Estimating abundance of harvested populations at the management unit scale.
@stdlib/random-strided-chisquare
Fill a strided array with pseudorandom numbers drawn from a chi-square distribution.
eophis
Couple Python and Machine Learning models with Geophysical simulation codes through OASIS
potter_pearson_2023_code
A repository containing analysis code for the Potter & Pearson 2023 ("Assessing the global ocean science community: Understanding international collaboration, concerns, and the current state of ocean basin research") published in npj Ocean Sustainability
abap
Code for downloading and working with data from the African Bird Atlas Project
pygrinder
PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing
iceberg-dsl
A compositional diagramming and animation library as an eDSL in Python
spikeflow
Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization
word-embeddings-repository-for-turkish
Code for "A Comprehensive Analysis of Static Word Embeddings for Turkish". Expert Systems with Applications 2024.
stanfordssotestingground
Stanford SSO Testing Ground to Experiment with Configurations in Google Firebase
Marshall-Intrinsic-Units
Code for Marshall et al. 2025, "Intrinsic Units: Identifying a system’s causal grain".
black-library-cb-csv-experiment
Created from the template at CollectionBuilder/collectionbuilder-csv after realizing that the SHEETS version won't fit our needs.
quantum-transfer-learning-metastases
Quantum Transfer Learning for Lymph Node Metastases Detection
adequat_project_ai-and-optimization
Evolutionary Cost-Tolerance Optimization for Complex Assembly Mechanisms Via Simulation and Surrogate Modeling Approaches: Application on Micro Gears (http://dx.doi.org/10.21203/rs.3.rs-2487746/v1)
fair24rs_software_lifecycle_planning
This is the repository for the Software Management plan lecture for the FAIR4RS program at the University of Sheffield
augmentedphaseportrait
Matlab Code to create augmented phase portrait for planar difference equations
cell-detr
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
wse-async-ga
Cerebras Wafer-Scale Engine (WSE) kernel for evolution simulations and genetic algorithms
recurrence-mimicking-learning
Hyper-efficient Offline Recurrent Reinforcement Learning Algorithm. It solves decision path of any length without sequential processing. Implemented for Sharpe Ratio optimization as a base problem.
compbuoy
Software for the validation of vertical profiles of oceanic parameters
goschedviz
📊 Terminal-based Go scheduler visualization tool with real-time metrics, charts and insights
bgcflow
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
android-x128
Android x128 is a community project to virtualize and DeGoogle the Android operating system by Google, specifically the 128 bit versions that may be made in the future.
topological-quantum-consciousness
Open-source implementation of the Topological Quantum Consciousness framework. Includes PyPhi code, STM datasets, and simulation notebooks.
@stdlib/stats-base-sdsmean
Calculate the arithmetic mean of a single-precision floating-point strided array using extended accumulation.
quadris-project-pre-crash-near-crash-database
Pre-crash/near-crash database used/developed in the QUADRIS (Improved quantitative driver behavior models and safety assessment methods for ADAS and AD) project.
uDALES
uDALES: large-eddy-simulation software for urban flow, dispersion, and microclimate modelling - Published in JOSS (2021)
cycle-permutation-graphs
Contains an algorithm for generating cycle permutation graphs as well as an algorithm for filtering cycle permutation graphs. The generator also contains options for the generation of non-hamiltonian graphs and/or graphs with at least a specific girth.
na_logfiles
This is a repository that illustrates how you can use network analyses to analyze web-log files.
optical-filter-design-tool
What is the lowest insertion loss for a double-ring bandpass filter? How narrow the bandwidth can be made? These two factors are closely connected with the passband shape of the spectrum. This calculator helps you to visualize this, as well as designing a filter. If you used this tool in your work, please cite the paper in "Cite this repository".
quant-methods-elites
Quantitative Methods for Studying Elites: Demonstration for R
2025-09-22-hida-online
Course website for the HIDA workshop on Shell and Git on September 22 and 23, 2025
pyet
:sunflower: pyet is a Python package to estimate reference and potential evaporation.
slicer
Multi-platform, free open source software for visualization and image computing.
network-tree-reconciliation
Code and data for "An efficient algorithm for the reconciliation of a gene network and species tree"
thesis-nnlib
A machine-learning framework written in C++ and OpenACC-CUDA, inspired by Tensorflow and Keras, for training and evaluation of deep neural networks in NVIDIA GPU-accelerated systems.
r-nameparser-lib
An R library allowing parsing of surname, first name, and gender based on US census data.
g-rex_public
A Real World annotated physiological Dataset of Group Experiences
uc-ias-workflows
Data and Model workflows for the Invasive Alien Species Digital Twin (IASDT)
qole
An easy-to-use simulator for Quantum Circuits for JavaScript, based on Quantum Multiple-Valued Decision Diagrams.
compromise.jl
First-Order Multi-Objective Optimizer — Derivative-Free and Gradient Based