GitHub

https://github.com

Updated 11 months ago

https://github.com/climatecompatiblegrowth/geo-x-data-prep • Science 49%

Spatial data preparation tools for GeoH2 users.

Updated 11 months ago

https://github.com/cmendl/rqcopt_hpc • Science 49%

HPC implementation of Riemannian quantum circuit optimization

Updated 11 months ago

https://github.com/coderefinery/testing • Science 57%

Automated testing - Preventing yourself and others from breaking your functioning code

Updated 11 months ago

https://github.com/coin-or/symphony • Science 49%

SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features

Updated 11 months ago

macro-eeg-model • Science 57%

Macroscopic EEG modeling with axon propagation delays

Updated 11 months ago

https://github.com/computational-biology-aachen/synechocystis-photosynthesis-2024 • Science 49%

A mathematical model of photosynthetic electron transport in Synechocystis sp. PCC 6803

Updated 11 months ago

https://github.com/cosbidev/ostransformer • Science 49%

Official implementation for the paper ``A Deep Learning Approach for Overall Survival Prediction in Lung Cancer with Missing Values´´

Updated 11 months ago

https://github.com/cosmo-pop/flowfusion • Science 54%

Generative modelling using diffusion models and flow-matching

Updated 11 months ago

https://github.com/crsu-apps/popviz • Science 49%

A visualisation package to show absolute effects as a proportion of people

Updated 11 months ago

feathers • Science 44%

Updated 11 months ago

stroud_preserve • Science 44%

Updated 11 months ago

https://github.com/ctu-vras/monoforce • Science 49%

[IROS 2024] [ICML 2024 Workshop Differentiable Almost Everything] MonoForce: Learnable Image-conditioned Physics Engine

Updated 11 months ago

assignment1 • Science 44%

Updated 11 months ago

https://github.com/cyclotronresearchcentre/bidsme_containerisation • Science 44%

Bringing BIDSme into a container, then NeuroDesk

Updated 11 months ago

@hugoalh/url-regexp • Science 44%

An ECMAScript (JavaScript & TypeScript) module for URL regular expression.

Updated 11 months ago

https://github.com/danielathome19/engram-neural-network • Science 49%

tensorflow-engram: A Python package for Engram Neural Networks, adding biologically-inspired Hebbian memory and engram layers to TensorFlow/Keras models, supporting memory traces, plasticity, attention, and sparsity for neural sequence learning.

Updated 11 months ago

https://github.com/danielenricocahall/keras-unet • Science 49%

Implementation of U-Net in Keras

Updated 11 months ago

https://github.com/data-science-in-mechanical-engineering/mixed_precision_for_jax • Science 57%

A repository for Mixed Precision Training in JAX based on Equinox.

Updated 11 months ago

https://github.com/dataunitylab/jsonoid-discovery • Science 57%

Distributed JSON schema discovery

Updated 10 months ago

Graphem - JAX: Node Influence Maximization via Geometric Embeddings • Science 98%

Graphem - JAX: Node Influence Maximization via Geometric Embeddings - Published in JOSS (2025)

Updated 10 months ago

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi • Science 93%

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi - Published in JOSS (2025)

Updated 11 months ago

genotyping-array-qc • Science 44%

Nextflow pipeline for quality control of genotyping data based on arrays.

Updated 11 months ago

helbercl • Science 57%

Estudo JPA Hibernate

Updated 11 months ago

datapipe • Science 44%

An audio ETL pipeline for generating datasets from youtube sources

Updated 11 months ago

@stdlib/array-empty-like • Science 44%

Create an uninitialized array having the same length and data type as a provided array.

Updated 11 months ago

array-base-broadcasted-ternary3d • Science 44%

Apply a ternary callback to elements in three broadcasted input arrays and assign results to elements in a three-dimensional nested output array.

Updated 11 months ago

napi-argv-bool • Science 44%

Convert a Node-API value to a boolean.

Updated 11 months ago

westus_peff • Science 44%

Updated 11 months ago

citation_normalisation • Science 44%

The goal of this repository is to create a tool that creates a normalised citation output based on any identifier that directs to a publication. The idea is to gather information using different freely available APIs.

Scientific Software
Updated 11 months ago

qsort R package — Peer-reviewed • Science 93%

qsort R package: A New Tool for Scoring Q-sort Data - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Updated 11 months ago

complexity-in-complexity • Science 54%

Code for "Complexity in Complexity: Understanding Visual Complexity Through Structure, Color, and Surprise". CogSci, 2025 & ICLR Re-Align Workshop, 2025.

Updated 11 months ago

monarch-systemd • Science 44%

Mirror of systemd

Updated 11 months ago

sorawa • Science 44%

Updated 11 months ago

blas-base-wasm-ccopy • Science 44%

Copy values from one complex single-precision floating-point vector to another complex single-precision floating-point vector.

Updated 11 months ago

iter-cuevery-by • Science 44%

Create an iterator which cumulatively tests whether every iterated value passes a test implemented by a predicate function.

Updated 10 months ago

https://github.com/gschwefer/template_builder • Science 10%

Scripts to create ImPACT templates

Scientific Software
Updated 11 months ago

OrbDot — Peer-reviewed • Science 93%

OrbDot: A Python package for studying the secular evolution of exoplanet orbits - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

ginjax — Peer-reviewed • Science 93%

ginjax: E(d)-Equivariant CNN for Tensor Images - Published in JOSS (2025)

Mathematics Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

GraphCalc — Peer-reviewed • Science 93%

GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems - Published in JOSS (2025)

Sociology
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

scmorph — Peer-reviewed • Science 98%

scmorph: a Python package for analysing single-cell morphological profiles - Published in JOSS (2025)

Biochemistry, Genetics and Molecular Biology Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

slap2-utils — Peer-reviewed • Science 93%

slap2-utils: Tools for Processing SLAP2 Data - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

CaNS-Fizzy — Peer-reviewed • Science 93%

CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

TMLE.jl — Peer-reviewed • Science 98%

TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

MCSimMod — Peer-reviewed • Science 93%

MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

Snowdrop — Peer-reviewed • Science 93%

Snowdrop: Python Package for DSGE Modeling - Published in JOSS (2025)

Sociology Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

smolyax — Peer-reviewed • Science 98%

smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

Parallel-CDM — Peer-reviewed • Science 98%

Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB - Published in JOSS (2025)

Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

ChemInformant — Peer-reviewed • Science 98%

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)

Engineering Psychology (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

https://github.com/icecube/rust-bootcamp-2021 • Science 8%

IceCube Rust Bootcamp - 2021 Edition

Scientific Software
Updated 11 months ago

SDA — Peer-reviewed • Science 93%

SDA: a symbolic differential algebra package in C++ - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

voice — Peer-reviewed • Science 93%

voice: A Comprehensive R Package for Audio Analysis - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

BayesReconPy — Peer-reviewed • Science 93%

BayesReconPy: A Python package for forecast reconciliation - Published in JOSS (2025)

Mathematics (39%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

SOAP — Peer-reviewed • Science 93%

SOAP: A Python Package for Calculating the Properties of Galaxies and Halos Formed in Cosmological Simulations - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

PolytopeWalk — Peer-reviewed • Science 93%

PolytopeWalk: Sparse MCMC Sampling over Polytopes - Published in JOSS (2025)

Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

The Population Synthesis Toolkit (PST) Python Library — Peer-reviewed • Science 98%

The Population Synthesis Toolkit (PST) Python Library - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

PyStarshade — Peer-reviewed • Science 93%

PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades - Published in JOSS (2025)

Engineering (32%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

PAAT — Peer-reviewed • Science 93%

PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python - Published in JOSS (2025)

Mathematics Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Updated 3 months ago

LCPP: Learning Curve Plus Plus • Science 87%

LCPP: Learning Curve Plus Plus - Published in JOSS (2026)

Scientific Software
Updated 11 months ago

EvoVis — Peer-reviewed • Science 67%

EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms - Published in JOSS (2025)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

ExcelToShiny — Peer-reviewed • Science 93%

ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

VectoRose — Peer-reviewed • Science 98%

VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

bisonpicsuite — Peer-reviewed • Science 93%

bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. - Published in JOSS (2025)

Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

gaia — Peer-reviewed • Science 100%

gaia: An R package to estimate crop yield responses to temperature and precipitation - Published in JOSS (2025)

Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

Lighter — Peer-reviewed • Science 93%

Lighter: Configuration-Driven Deep Learning - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

3DQLayers — Peer-reviewed • Science 98%

3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

TurboFlow — Peer-reviewed • Science 93%

TurboFlow: Meanline Modelling of Axial Turbines - Published in JOSS (2025)

Computer Science (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

PointClouds.jl — Peer-reviewed • Science 96%

PointClouds.jl: Fast & flexible processing of lidar data - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

dpest — Peer-reviewed • Science 98%

dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration - Published in JOSS (2025)

Engineering (41%)
Scientific Software · Peer-reviewed
Updated 10 months ago

https://github.com/gschwefer/gammapy • Science 41%

A Python package for gamma-ray astronomy

Scientific Software
Updated 11 months ago

MEDUSA — Peer-reviewed • Science 93%

MEDUSA: An R tool to model equity and distributional impacts - Published in JOSS (2025)

Engineering (33%)
Scientific Software · Peer-reviewed
Updated 11 months ago

gocannon • Science 44%

:boom: Performance-focused HTTP load testing tool written in Go

Scientific Software
Updated 11 months ago

AutoUncertainties — Peer-reviewed • Science 93%

AutoUncertainties: A Python Package for Uncertainty Propagation - Published in JOSS (2025)

Mathematics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

Solar Data Tools — Peer-reviewed • Science 96%

Solar Data Tools: a Python library for automated analysis of unlabeled PV data - Published in JOSS (2025)

Artificial Intelligence and Machine Learning Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

medRCT — Peer-reviewed • Science 93%

medRCT: Causal mediation analysis estimating interventional effects mapped to a target trial in R - Published in JOSS (2025)

Scientific Software
Updated 11 months ago

RiverFlowDynamics v1.0 — Peer-reviewed • Science 92%

RiverFlowDynamics v1.0: A Landlab component for computing two-dimensional river flow dynamics - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 11 months ago

Mozzie — Peer-reviewed • Science 98%

Mozzie: a computationally efficient simulator for the spatio-temporal modelling of mosquitoes - Published in JOSS (2025)

Materials Science (40%) Medicine (40%) Agricultural and Biological Sciences (40%)
Scientific Software · Peer-reviewed